Hb_011472_040

Information

Type -
Description -
Location Contig11472: 45444-47920
Sequence    

Annotation

kegg
ID cit:102626898
description clathrin light chain 3-like
nr
ID XP_012087883.1
description PREDICTED: clathrin light chain 3 [Jatropha curcas]
swissprot
ID F4J5M9
description Clathrin light chain 3 OS=Arabidopsis thaliana GN=At3g51890 PE=1 SV=1
trembl
ID A0A067JKF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25030 PE=4 SV=1
Gene Ontology
ID GO:0009504
description clathrin light chain 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04453: 45526-47935 , PASA_asmbl_04454: 47222-47852
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011472_040 0.0 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]
2 Hb_084934_010 0.0939718516 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
3 Hb_006189_010 0.1033354985 - - -
4 Hb_001975_070 0.1109513217 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
5 Hb_030312_040 0.1113113164 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
6 Hb_001655_070 0.120515335 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
7 Hb_012052_060 0.1207815432 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
8 Hb_001184_100 0.1210303202 - - PREDICTED: zinc finger protein 4-like [Populus euphratica]
9 Hb_001811_150 0.1218957076 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
10 Hb_001817_180 0.1222471951 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
11 Hb_000138_040 0.1223554086 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
12 Hb_000116_480 0.1233142267 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
13 Hb_002960_060 0.1237950777 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 28 [Jatropha curcas]
14 Hb_004221_010 0.1269529399 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
15 Hb_002762_060 0.1297370692 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
16 Hb_134226_010 0.1298143862 - - 40S ribosomal protein S21e, putative [Ricinus communis]
17 Hb_001514_200 0.1300259141 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
18 Hb_001186_060 0.1327383298 - - -
19 Hb_001141_080 0.1329253653 - - PREDICTED: protein RDM1 [Jatropha curcas]
20 Hb_000300_280 0.1329975916 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011472_040 Hb_011472_040 Hb_084934_010 Hb_084934_010 Hb_011472_040--Hb_084934_010 Hb_006189_010 Hb_006189_010 Hb_011472_040--Hb_006189_010 Hb_001975_070 Hb_001975_070 Hb_011472_040--Hb_001975_070 Hb_030312_040 Hb_030312_040 Hb_011472_040--Hb_030312_040 Hb_001655_070 Hb_001655_070 Hb_011472_040--Hb_001655_070 Hb_012052_060 Hb_012052_060 Hb_011472_040--Hb_012052_060 Hb_084934_010--Hb_006189_010 Hb_003086_110 Hb_003086_110 Hb_084934_010--Hb_003086_110 Hb_157854_010 Hb_157854_010 Hb_084934_010--Hb_157854_010 Hb_118977_020 Hb_118977_020 Hb_084934_010--Hb_118977_020 Hb_084934_010--Hb_030312_040 Hb_180333_010 Hb_180333_010 Hb_006189_010--Hb_180333_010 Hb_004607_150 Hb_004607_150 Hb_006189_010--Hb_004607_150 Hb_001186_060 Hb_001186_060 Hb_006189_010--Hb_001186_060 Hb_006189_010--Hb_157854_010 Hb_005147_110 Hb_005147_110 Hb_001975_070--Hb_005147_110 Hb_001009_050 Hb_001009_050 Hb_001975_070--Hb_001009_050 Hb_000029_160 Hb_000029_160 Hb_001975_070--Hb_000029_160 Hb_002960_060 Hb_002960_060 Hb_001975_070--Hb_002960_060 Hb_001341_030 Hb_001341_030 Hb_001975_070--Hb_001341_030 Hb_000373_270 Hb_000373_270 Hb_001975_070--Hb_000373_270 Hb_006452_030 Hb_006452_030 Hb_030312_040--Hb_006452_030 Hb_000703_080 Hb_000703_080 Hb_030312_040--Hb_000703_080 Hb_002263_010 Hb_002263_010 Hb_030312_040--Hb_002263_010 Hb_003494_240 Hb_003494_240 Hb_030312_040--Hb_003494_240 Hb_000608_120 Hb_000608_120 Hb_030312_040--Hb_000608_120 Hb_008725_250 Hb_008725_250 Hb_030312_040--Hb_008725_250 Hb_004055_010 Hb_004055_010 Hb_001655_070--Hb_004055_010 Hb_000059_210 Hb_000059_210 Hb_001655_070--Hb_000059_210 Hb_008959_030 Hb_008959_030 Hb_001655_070--Hb_008959_030 Hb_002400_070 Hb_002400_070 Hb_001655_070--Hb_002400_070 Hb_004221_010 Hb_004221_010 Hb_001655_070--Hb_004221_010 Hb_015941_030 Hb_015941_030 Hb_001655_070--Hb_015941_030 Hb_000877_060 Hb_000877_060 Hb_012052_060--Hb_000877_060 Hb_004920_040 Hb_004920_040 Hb_012052_060--Hb_004920_040 Hb_003106_070 Hb_003106_070 Hb_012052_060--Hb_003106_070 Hb_012052_060--Hb_004221_010 Hb_012052_060--Hb_006189_010 Hb_012052_060--Hb_084934_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
626.64 317.286 17.7634 68.1261 580.928 634.038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
607.804 442.252 310.087 364.531 22.5295

CAGE analysis