Hb_011472_050

Information

Type -
Description -
Location Contig11472: 54334-62215
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011472_050 0.0 - - -
2 Hb_010565_030 0.0761710496 - - hypothetical protein VITISV_006810 [Vitis vinifera]
3 Hb_005542_010 0.1063235418 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
4 Hb_067472_010 0.1090103076 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
5 Hb_001366_260 0.1101035963 - - T4.15 [Malus x robusta]
6 Hb_000173_110 0.1139244448 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
7 Hb_009434_060 0.1173293161 - - T4.15 [Malus x robusta]
8 Hb_116784_020 0.1189224739 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
9 Hb_001514_150 0.1192243993 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
10 Hb_001405_230 0.1260646799 - - STELAR K+ outward rectifier isoform 2 [Theobroma cacao]
11 Hb_000820_100 0.1280732292 - - RNA-directed DNA polymerase [Arachis hypogaea]
12 Hb_003786_010 0.1311300575 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
13 Hb_003517_090 0.131427347 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
14 Hb_004242_120 0.131816024 - - Organic cation transporter, putative [Ricinus communis]
15 Hb_002110_110 0.1319872247 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
16 Hb_000574_320 0.1352823912 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
17 Hb_000237_170 0.1353827588 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 6 [Jatropha curcas]
18 Hb_001468_040 0.1359821009 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
19 Hb_005092_090 0.1410968429 - - cold regulated protein [Manihot esculenta]
20 Hb_003913_040 0.1420330841 - - ferric reductase oxidase [Manihot esculenta]

Gene co-expression network

sample Hb_011472_050 Hb_011472_050 Hb_010565_030 Hb_010565_030 Hb_011472_050--Hb_010565_030 Hb_005542_010 Hb_005542_010 Hb_011472_050--Hb_005542_010 Hb_067472_010 Hb_067472_010 Hb_011472_050--Hb_067472_010 Hb_001366_260 Hb_001366_260 Hb_011472_050--Hb_001366_260 Hb_000173_110 Hb_000173_110 Hb_011472_050--Hb_000173_110 Hb_009434_060 Hb_009434_060 Hb_011472_050--Hb_009434_060 Hb_010565_030--Hb_005542_010 Hb_010565_030--Hb_000173_110 Hb_011609_210 Hb_011609_210 Hb_010565_030--Hb_011609_210 Hb_000123_340 Hb_000123_340 Hb_010565_030--Hb_000123_340 Hb_002110_110 Hb_002110_110 Hb_010565_030--Hb_002110_110 Hb_005542_010--Hb_002110_110 Hb_005542_010--Hb_011609_210 Hb_005542_010--Hb_000173_110 Hb_005542_010--Hb_009434_060 Hb_116784_020 Hb_116784_020 Hb_067472_010--Hb_116784_020 Hb_067472_010--Hb_001366_260 Hb_001468_040 Hb_001468_040 Hb_067472_010--Hb_001468_040 Hb_000820_100 Hb_000820_100 Hb_067472_010--Hb_000820_100 Hb_002013_030 Hb_002013_030 Hb_067472_010--Hb_002013_030 Hb_001366_260--Hb_000820_100 Hb_001366_260--Hb_116784_020 Hb_007543_020 Hb_007543_020 Hb_001366_260--Hb_007543_020 Hb_001366_260--Hb_000173_110 Hb_005092_090 Hb_005092_090 Hb_001366_260--Hb_005092_090 Hb_000173_110--Hb_000123_340 Hb_000173_110--Hb_000820_100 Hb_000173_110--Hb_116784_020 Hb_009434_060--Hb_001366_260 Hb_009434_060--Hb_000820_100 Hb_009434_060--Hb_007543_020 Hb_009434_060--Hb_116784_020 Hb_009434_060--Hb_000173_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.177614 3.85553 1.99021 1.37691 0.170456 0.30863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0903274 0.0710481 0.131531 1.58238 8.70273

CAGE analysis