Hb_011485_070

Information

Type -
Description -
Location Contig11485: 78635-83406
Sequence    

Annotation

kegg
ID rcu:RCOM_0213470
description Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15)
nr
ID XP_002531269.1
description Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
swissprot
ID O24454
description Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabidopsis thaliana GN=UBP3 PE=1 SV=1
trembl
ID B9SZ50
description Ubiquitin carboxyl-terminal hydrolase OS=Ricinus communis GN=RCOM_0213470 PE=3 SV=1
Gene Ontology
ID GO:0008234
description ubiquitin carboxyl-terminal hydrolase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04484: 78744-83240
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011485_070 0.0 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
2 Hb_000185_040 0.0567970895 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
3 Hb_001341_170 0.0613512617 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
4 Hb_004032_150 0.0644988619 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
5 Hb_000092_170 0.0647721177 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
6 Hb_002481_080 0.0651485593 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
7 Hb_002675_070 0.0668902732 - - PREDICTED: protein CASC3 [Jatropha curcas]
8 Hb_000556_160 0.0755290948 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
9 Hb_000395_190 0.0758409465 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
10 Hb_000185_030 0.0760107283 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
11 Hb_002078_350 0.0760839278 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
12 Hb_004724_150 0.0767408982 - - expressed protein, putative [Ricinus communis]
13 Hb_001635_060 0.0770570969 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
14 Hb_003761_010 0.0770576229 - - alcohol dehydrogenase, putative [Ricinus communis]
15 Hb_000866_170 0.0770902292 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000297_010 0.0794836372 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
17 Hb_000890_210 0.0802481781 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
18 Hb_000318_290 0.080705872 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
19 Hb_010964_040 0.0809268706 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
20 Hb_001198_100 0.0809533728 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]

Gene co-expression network

sample Hb_011485_070 Hb_011485_070 Hb_000185_040 Hb_000185_040 Hb_011485_070--Hb_000185_040 Hb_001341_170 Hb_001341_170 Hb_011485_070--Hb_001341_170 Hb_004032_150 Hb_004032_150 Hb_011485_070--Hb_004032_150 Hb_000092_170 Hb_000092_170 Hb_011485_070--Hb_000092_170 Hb_002481_080 Hb_002481_080 Hb_011485_070--Hb_002481_080 Hb_002675_070 Hb_002675_070 Hb_011485_070--Hb_002675_070 Hb_002740_180 Hb_002740_180 Hb_000185_040--Hb_002740_180 Hb_001377_490 Hb_001377_490 Hb_000185_040--Hb_001377_490 Hb_000318_290 Hb_000318_290 Hb_000185_040--Hb_000318_290 Hb_000185_040--Hb_001341_170 Hb_002435_120 Hb_002435_120 Hb_000185_040--Hb_002435_120 Hb_004724_150 Hb_004724_150 Hb_001341_170--Hb_004724_150 Hb_000225_040 Hb_000225_040 Hb_001341_170--Hb_000225_040 Hb_000890_210 Hb_000890_210 Hb_001341_170--Hb_000890_210 Hb_000556_160 Hb_000556_160 Hb_001341_170--Hb_000556_160 Hb_010618_010 Hb_010618_010 Hb_001341_170--Hb_010618_010 Hb_004767_100 Hb_004767_100 Hb_004032_150--Hb_004767_100 Hb_007416_280 Hb_007416_280 Hb_004032_150--Hb_007416_280 Hb_001638_170 Hb_001638_170 Hb_004032_150--Hb_001638_170 Hb_004032_150--Hb_000318_290 Hb_148644_010 Hb_148644_010 Hb_004032_150--Hb_148644_010 Hb_001489_150 Hb_001489_150 Hb_004032_150--Hb_001489_150 Hb_003525_010 Hb_003525_010 Hb_000092_170--Hb_003525_010 Hb_044728_010 Hb_044728_010 Hb_000092_170--Hb_044728_010 Hb_000107_330 Hb_000107_330 Hb_000092_170--Hb_000107_330 Hb_002078_350 Hb_002078_350 Hb_000092_170--Hb_002078_350 Hb_009767_110 Hb_009767_110 Hb_000092_170--Hb_009767_110 Hb_028227_070 Hb_028227_070 Hb_002481_080--Hb_028227_070 Hb_000028_180 Hb_000028_180 Hb_002481_080--Hb_000028_180 Hb_001016_120 Hb_001016_120 Hb_002481_080--Hb_001016_120 Hb_000645_090 Hb_000645_090 Hb_002481_080--Hb_000645_090 Hb_002000_080 Hb_002000_080 Hb_002481_080--Hb_002000_080 Hb_002675_070--Hb_004032_150 Hb_000127_040 Hb_000127_040 Hb_002675_070--Hb_000127_040 Hb_002213_070 Hb_002213_070 Hb_002675_070--Hb_002213_070 Hb_002675_070--Hb_000185_040 Hb_001198_100 Hb_001198_100 Hb_002675_070--Hb_001198_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1087 15.8135 8.09991 15.6449 14.8122 24.4859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.7672 20.9298 23.2812 22.0659 11.8803

CAGE analysis