Hb_011486_030

Information

Type -
Description -
Location Contig11486: 19740-21984
Sequence    

Annotation

kegg
ID rcu:RCOM_1381660
description branched-chain amino acid aminotransferase, putative (EC:2.6.1.42)
nr
ID XP_002522058.1
description branched-chain amino acid aminotransferase, putative [Ricinus communis]
swissprot
ID Q9M439
description Branched-chain-amino-acid aminotransferase 2, chloroplastic OS=Arabidopsis thaliana GN=BCAT2 PE=1 SV=1
trembl
ID B9S7U2
description Branched-chain-amino-acid aminotransferase OS=Ricinus communis GN=RCOM_1381660 PE=3 SV=1
Gene Ontology
ID GO:0052654
description branched-chain-amino-acid aminotransferase chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 030_L08r.ab1: 21944-24314

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011486_030 0.0 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
2 Hb_012660_010 0.0657191662 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
3 Hb_020332_040 0.0750727439 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
4 Hb_027141_010 0.0868844227 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_000301_030 0.0919321831 - - PREDICTED: pectate lyase-like [Jatropha curcas]
6 Hb_000076_200 0.0976713616 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001288_010 0.1012542689 - - -
8 Hb_000281_200 0.1056060226 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
9 Hb_003968_020 0.1057011134 - - PREDICTED: limonoid UDP-glucosyltransferase-like [Glycine max]
10 Hb_000648_120 0.1098626749 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
11 Hb_000189_260 0.1101710786 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000438_190 0.1145374106 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
13 Hb_005356_010 0.1148429407 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
14 Hb_002048_010 0.1149678356 - - unknown [Lotus japonicus]
15 Hb_000497_120 0.1165210979 - - conserved hypothetical protein [Ricinus communis]
16 Hb_107258_010 0.1167998717 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
17 Hb_000140_260 0.1199081952 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
18 Hb_000907_190 0.1211611828 - - PREDICTED: uncharacterized protein At4g15970-like [Jatropha curcas]
19 Hb_002232_370 0.1225466831 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
20 Hb_001544_040 0.1232161139 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]

Gene co-expression network

sample Hb_011486_030 Hb_011486_030 Hb_012660_010 Hb_012660_010 Hb_011486_030--Hb_012660_010 Hb_020332_040 Hb_020332_040 Hb_011486_030--Hb_020332_040 Hb_027141_010 Hb_027141_010 Hb_011486_030--Hb_027141_010 Hb_000301_030 Hb_000301_030 Hb_011486_030--Hb_000301_030 Hb_000076_200 Hb_000076_200 Hb_011486_030--Hb_000076_200 Hb_001288_010 Hb_001288_010 Hb_011486_030--Hb_001288_010 Hb_012660_010--Hb_020332_040 Hb_107258_010 Hb_107258_010 Hb_012660_010--Hb_107258_010 Hb_012660_010--Hb_001288_010 Hb_001863_290 Hb_001863_290 Hb_012660_010--Hb_001863_290 Hb_012660_010--Hb_000301_030 Hb_000189_260 Hb_000189_260 Hb_020332_040--Hb_000189_260 Hb_002048_010 Hb_002048_010 Hb_020332_040--Hb_002048_010 Hb_020332_040--Hb_027141_010 Hb_000976_020 Hb_000976_020 Hb_020332_040--Hb_000976_020 Hb_000140_260 Hb_000140_260 Hb_027141_010--Hb_000140_260 Hb_076895_020 Hb_076895_020 Hb_027141_010--Hb_076895_020 Hb_004200_040 Hb_004200_040 Hb_027141_010--Hb_004200_040 Hb_000539_080 Hb_000539_080 Hb_027141_010--Hb_000539_080 Hb_000205_210 Hb_000205_210 Hb_027141_010--Hb_000205_210 Hb_003855_070 Hb_003855_070 Hb_000301_030--Hb_003855_070 Hb_005356_010 Hb_005356_010 Hb_000301_030--Hb_005356_010 Hb_000301_030--Hb_107258_010 Hb_000648_120 Hb_000648_120 Hb_000301_030--Hb_000648_120 Hb_003968_020 Hb_003968_020 Hb_000076_200--Hb_003968_020 Hb_007532_050 Hb_007532_050 Hb_000076_200--Hb_007532_050 Hb_004037_010 Hb_004037_010 Hb_000076_200--Hb_004037_010 Hb_000076_200--Hb_005356_010 Hb_000161_250 Hb_000161_250 Hb_000076_200--Hb_000161_250 Hb_007527_020 Hb_007527_020 Hb_000076_200--Hb_007527_020 Hb_000281_200 Hb_000281_200 Hb_001288_010--Hb_000281_200 Hb_004564_010 Hb_004564_010 Hb_001288_010--Hb_004564_010 Hb_178389_020 Hb_178389_020 Hb_001288_010--Hb_178389_020 Hb_001442_080 Hb_001442_080 Hb_001288_010--Hb_001442_080 Hb_001288_010--Hb_003968_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.433315 0.0618454 0.449558 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.037435 0 0 4.83085 0.183497

CAGE analysis