Hb_011496_010

Information

Type -
Description -
Location Contig11496: 10371-11891
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10700g
description POPTRDRAFT_762560; pentatricopeptide repeat-containing family protein
nr
ID XP_012089729.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
swissprot
ID Q8L6Y7
description Pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Arabidopsis thaliana GN=At2g38420 PE=2 SV=2
trembl
ID A0A067JJ28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011496_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
2 Hb_002169_010 0.0525690548 - - PREDICTED: la-related protein 6B [Jatropha curcas]
3 Hb_029281_010 0.0678958114 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
4 Hb_000462_150 0.0726105497 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
5 Hb_002818_040 0.0750199334 - - tRNA synthetase-related family protein [Populus trichocarpa]
6 Hb_003638_140 0.0781618197 - - protein binding protein, putative [Ricinus communis]
7 Hb_001936_050 0.0790286846 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
8 Hb_127979_010 0.0798616856 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
9 Hb_160818_010 0.0799401228 - - -
10 Hb_002681_140 0.0812463005 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
11 Hb_000490_030 0.0863319611 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
12 Hb_001623_550 0.0880279089 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
13 Hb_000176_140 0.0886114802 - - PREDICTED: bystin [Jatropha curcas]
14 Hb_000001_180 0.0908990038 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
15 Hb_005314_010 0.0913173864 - - nucleotide binding protein, putative [Ricinus communis]
16 Hb_000608_120 0.0913445336 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
17 Hb_003384_030 0.0927085136 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
18 Hb_009404_010 0.0952726026 - - PREDICTED: casein kinase II subunit alpha-2-like [Glycine max]
19 Hb_000491_080 0.0958924428 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
20 Hb_022288_010 0.095956352 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]

Gene co-expression network

sample Hb_011496_010 Hb_011496_010 Hb_002169_010 Hb_002169_010 Hb_011496_010--Hb_002169_010 Hb_029281_010 Hb_029281_010 Hb_011496_010--Hb_029281_010 Hb_000462_150 Hb_000462_150 Hb_011496_010--Hb_000462_150 Hb_002818_040 Hb_002818_040 Hb_011496_010--Hb_002818_040 Hb_003638_140 Hb_003638_140 Hb_011496_010--Hb_003638_140 Hb_001936_050 Hb_001936_050 Hb_011496_010--Hb_001936_050 Hb_002169_010--Hb_029281_010 Hb_160818_010 Hb_160818_010 Hb_002169_010--Hb_160818_010 Hb_002169_010--Hb_000462_150 Hb_002377_050 Hb_002377_050 Hb_002169_010--Hb_002377_050 Hb_002169_010--Hb_002818_040 Hb_000490_030 Hb_000490_030 Hb_029281_010--Hb_000490_030 Hb_005314_010 Hb_005314_010 Hb_029281_010--Hb_005314_010 Hb_001439_180 Hb_001439_180 Hb_029281_010--Hb_001439_180 Hb_000413_130 Hb_000413_130 Hb_029281_010--Hb_000413_130 Hb_003384_030 Hb_003384_030 Hb_000462_150--Hb_003384_030 Hb_001969_040 Hb_001969_040 Hb_000462_150--Hb_001969_040 Hb_000462_150--Hb_002818_040 Hb_000230_330 Hb_000230_330 Hb_000462_150--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_000462_150--Hb_001584_110 Hb_000001_180 Hb_000001_180 Hb_000462_150--Hb_000001_180 Hb_000340_510 Hb_000340_510 Hb_002818_040--Hb_000340_510 Hb_002818_040--Hb_003384_030 Hb_002818_040--Hb_000001_180 Hb_002818_040--Hb_005314_010 Hb_005914_230 Hb_005914_230 Hb_002818_040--Hb_005914_230 Hb_002215_050 Hb_002215_050 Hb_003638_140--Hb_002215_050 Hb_001369_060 Hb_001369_060 Hb_003638_140--Hb_001369_060 Hb_024714_030 Hb_024714_030 Hb_003638_140--Hb_024714_030 Hb_000608_120 Hb_000608_120 Hb_003638_140--Hb_000608_120 Hb_001804_060 Hb_001804_060 Hb_003638_140--Hb_001804_060 Hb_001936_050--Hb_000490_030 Hb_002874_070 Hb_002874_070 Hb_001936_050--Hb_002874_070 Hb_000358_080 Hb_000358_080 Hb_001936_050--Hb_000358_080 Hb_001936_050--Hb_002818_040 Hb_001936_050--Hb_000340_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.80268 2.60928 0.933432 0.683319 8.01591 11.0201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.48712 3.36091 5.40877 1.97816 0.860427

CAGE analysis