Hb_011497_010

Information

Type -
Description -
Location Contig11497: 11167-12350
Sequence    

Annotation

kegg
ID pop:POPTR_0001s03880g
description POPTRDRAFT_177749; hypothetical protein
nr
ID XP_012080828.1
description PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16194 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04510: 10290-10391 , PASA_asmbl_04511: 11162-12522
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011497_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
2 Hb_003018_160 0.0495519923 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
3 Hb_003716_020 0.0711508361 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
4 Hb_001575_080 0.0718493055 - - PREDICTED: villin-4-like [Jatropha curcas]
5 Hb_002159_040 0.0797717372 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
6 Hb_000244_240 0.0808972749 - - ATP binding protein, putative [Ricinus communis]
7 Hb_000116_280 0.08362447 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
8 Hb_006002_030 0.0889811313 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
9 Hb_002493_090 0.0907759181 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
10 Hb_001975_020 0.0922116132 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
11 Hb_005000_270 0.0934230756 - - unnamed protein product [Vitis vinifera]
12 Hb_046615_020 0.094372711 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
13 Hb_006816_300 0.0953304649 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
14 Hb_022250_110 0.0969570661 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
15 Hb_004225_130 0.0987552257 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
16 Hb_078477_040 0.0987675649 - - nuclear movement protein nudc, putative [Ricinus communis]
17 Hb_000329_490 0.0988558118 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
18 Hb_001040_120 0.1009278087 - - allantoinase, putative [Ricinus communis]
19 Hb_002928_060 0.1013038851 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
20 Hb_005295_040 0.1013675624 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]

Gene co-expression network

sample Hb_011497_010 Hb_011497_010 Hb_003018_160 Hb_003018_160 Hb_011497_010--Hb_003018_160 Hb_003716_020 Hb_003716_020 Hb_011497_010--Hb_003716_020 Hb_001575_080 Hb_001575_080 Hb_011497_010--Hb_001575_080 Hb_002159_040 Hb_002159_040 Hb_011497_010--Hb_002159_040 Hb_000244_240 Hb_000244_240 Hb_011497_010--Hb_000244_240 Hb_000116_280 Hb_000116_280 Hb_011497_010--Hb_000116_280 Hb_003018_160--Hb_001575_080 Hb_006816_300 Hb_006816_300 Hb_003018_160--Hb_006816_300 Hb_003018_160--Hb_000116_280 Hb_002493_090 Hb_002493_090 Hb_003018_160--Hb_002493_090 Hb_001975_020 Hb_001975_020 Hb_003018_160--Hb_001975_020 Hb_007668_020 Hb_007668_020 Hb_003716_020--Hb_007668_020 Hb_003581_020 Hb_003581_020 Hb_003716_020--Hb_003581_020 Hb_005000_270 Hb_005000_270 Hb_003716_020--Hb_005000_270 Hb_000849_100 Hb_000849_100 Hb_003716_020--Hb_000849_100 Hb_006002_030 Hb_006002_030 Hb_003716_020--Hb_006002_030 Hb_001575_080--Hb_000116_280 Hb_175338_020 Hb_175338_020 Hb_001575_080--Hb_175338_020 Hb_003847_120 Hb_003847_120 Hb_001575_080--Hb_003847_120 Hb_000906_060 Hb_000906_060 Hb_001575_080--Hb_000906_060 Hb_002159_040--Hb_000244_240 Hb_000441_160 Hb_000441_160 Hb_002159_040--Hb_000441_160 Hb_004143_070 Hb_004143_070 Hb_002159_040--Hb_004143_070 Hb_002159_030 Hb_002159_030 Hb_002159_040--Hb_002159_030 Hb_000329_490 Hb_000329_490 Hb_002159_040--Hb_000329_490 Hb_001301_210 Hb_001301_210 Hb_000244_240--Hb_001301_210 Hb_007348_030 Hb_007348_030 Hb_000244_240--Hb_007348_030 Hb_046615_020 Hb_046615_020 Hb_000244_240--Hb_046615_020 Hb_000120_510 Hb_000120_510 Hb_000244_240--Hb_000120_510 Hb_000230_370 Hb_000230_370 Hb_000244_240--Hb_000230_370 Hb_005399_020 Hb_005399_020 Hb_000116_280--Hb_005399_020 Hb_000367_290 Hb_000367_290 Hb_000116_280--Hb_000367_290 Hb_000116_280--Hb_001975_020 Hb_000116_280--Hb_006816_300 Hb_002105_080 Hb_002105_080 Hb_000116_280--Hb_002105_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.1255 32.0324 17.556 24.5399 79.8537 104.094
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.9177 12.697 33.0239 18.6334 12.8637

CAGE analysis