Hb_011512_040

Information

Type -
Description -
Location Contig11512: 22784-23544
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_482258
description hypothetical protein
nr
ID XP_012077666.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
swissprot
ID O49313
description NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Arabidopsis thaliana GN=At2g33220 PE=2 SV=1
trembl
ID A0A067KB62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12921 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04563: 22830-34541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011512_040 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
2 Hb_017225_020 0.0828706513 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
3 Hb_005446_010 0.0831468589 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]
4 Hb_000853_190 0.0855133331 - - mitochondrial carrier protein, putative [Ricinus communis]
5 Hb_000419_070 0.0876781662 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
6 Hb_003849_150 0.0888862566 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]
7 Hb_010883_050 0.0891451572 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
8 Hb_000673_020 0.0915070388 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
9 Hb_002742_090 0.0931805776 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
10 Hb_001776_160 0.0937626198 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
11 Hb_027654_050 0.0948750475 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
12 Hb_000436_130 0.0955097185 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
13 Hb_001218_040 0.0956688234 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
14 Hb_001329_150 0.0967547809 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
15 Hb_000327_060 0.0967816229 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
16 Hb_000224_140 0.0975798014 - - ribonuclease z, chloroplast, putative [Ricinus communis]
17 Hb_028872_080 0.098700083 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
18 Hb_012423_030 0.0996047206 - - PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_161175_010 0.1002673713 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
20 Hb_003768_030 0.1017341664 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011512_040 Hb_011512_040 Hb_017225_020 Hb_017225_020 Hb_011512_040--Hb_017225_020 Hb_005446_010 Hb_005446_010 Hb_011512_040--Hb_005446_010 Hb_000853_190 Hb_000853_190 Hb_011512_040--Hb_000853_190 Hb_000419_070 Hb_000419_070 Hb_011512_040--Hb_000419_070 Hb_003849_150 Hb_003849_150 Hb_011512_040--Hb_003849_150 Hb_010883_050 Hb_010883_050 Hb_011512_040--Hb_010883_050 Hb_017225_020--Hb_005446_010 Hb_027654_050 Hb_027654_050 Hb_017225_020--Hb_027654_050 Hb_007576_170 Hb_007576_170 Hb_017225_020--Hb_007576_170 Hb_000329_200 Hb_000329_200 Hb_017225_020--Hb_000329_200 Hb_010361_010 Hb_010361_010 Hb_017225_020--Hb_010361_010 Hb_028872_080 Hb_028872_080 Hb_017225_020--Hb_028872_080 Hb_004324_270 Hb_004324_270 Hb_005446_010--Hb_004324_270 Hb_000827_050 Hb_000827_050 Hb_005446_010--Hb_000827_050 Hb_000327_060 Hb_000327_060 Hb_005446_010--Hb_000327_060 Hb_003768_030 Hb_003768_030 Hb_005446_010--Hb_003768_030 Hb_000436_130 Hb_000436_130 Hb_000853_190--Hb_000436_130 Hb_000962_040 Hb_000962_040 Hb_000853_190--Hb_000962_040 Hb_000614_220 Hb_000614_220 Hb_000853_190--Hb_000614_220 Hb_027654_060 Hb_027654_060 Hb_000853_190--Hb_027654_060 Hb_002871_190 Hb_002871_190 Hb_000853_190--Hb_002871_190 Hb_001329_150 Hb_001329_150 Hb_000419_070--Hb_001329_150 Hb_001053_140 Hb_001053_140 Hb_000419_070--Hb_001053_140 Hb_011485_020 Hb_011485_020 Hb_000419_070--Hb_011485_020 Hb_000419_070--Hb_010883_050 Hb_002303_060 Hb_002303_060 Hb_000419_070--Hb_002303_060 Hb_003849_150--Hb_001329_150 Hb_161175_010 Hb_161175_010 Hb_003849_150--Hb_161175_010 Hb_003849_150--Hb_010883_050 Hb_006831_120 Hb_006831_120 Hb_003849_150--Hb_006831_120 Hb_000340_570 Hb_000340_570 Hb_003849_150--Hb_000340_570 Hb_010883_050--Hb_000436_130 Hb_006420_080 Hb_006420_080 Hb_010883_050--Hb_006420_080 Hb_002007_210 Hb_002007_210 Hb_010883_050--Hb_002007_210 Hb_000336_240 Hb_000336_240 Hb_010883_050--Hb_000336_240 Hb_076233_040 Hb_076233_040 Hb_010883_050--Hb_076233_040 Hb_003697_040 Hb_003697_040 Hb_010883_050--Hb_003697_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.8929 8.54001 17.0329 19.9674 15.5832 9.29391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.7525 49.4844 41.9522 17.6086 29.15

CAGE analysis