Hb_011512_060

Information

Type -
Description -
Location Contig11512: 34894-39854
Sequence    

Annotation

kegg
ID rcu:RCOM_1023530
description chaperonin-60kD, ch60, putative
nr
ID XP_012077667.1
description PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
swissprot
ID Q05046
description Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1
trembl
ID A0A067KEE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12922 PE=3 SV=1
Gene Ontology
ID GO:0005737
description chaperonin cpn60- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04565: 35042-36685 , PASA_asmbl_04566: 35460-35648
cDNA
(Sanger)
(ID:Location)		 020_J04r.ab1: 22830-34541

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011512_060 0.0 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
2 Hb_009558_040 0.0926571071 transcription factor TF Family: MYB hypothetical protein PHAVU_008G102000g [Phaseolus vulgaris]
3 Hb_000856_140 0.0929331619 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
4 Hb_000714_050 0.0935098447 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
5 Hb_010315_090 0.0936412963 - - suppressor of ty, putative [Ricinus communis]
6 Hb_008595_010 0.0938954497 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
7 Hb_006449_050 0.0955839158 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
8 Hb_000914_080 0.0969107863 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_000529_260 0.0978106283 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
10 Hb_005892_030 0.0989117827 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
11 Hb_010710_080 0.101059097 - - -
12 Hb_000347_570 0.1022853852 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
13 Hb_002221_050 0.10232386 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
14 Hb_000329_130 0.1028779335 - - beta-tubulin cofactor d, putative [Ricinus communis]
15 Hb_000320_200 0.1033784385 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
16 Hb_019153_020 0.1036685199 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
17 Hb_001307_080 0.1047150403 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
18 Hb_001417_050 0.1048274719 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
19 Hb_067193_010 0.1049004963 - - -
20 Hb_004429_160 0.1077557519 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011512_060 Hb_011512_060 Hb_009558_040 Hb_009558_040 Hb_011512_060--Hb_009558_040 Hb_000856_140 Hb_000856_140 Hb_011512_060--Hb_000856_140 Hb_000714_050 Hb_000714_050 Hb_011512_060--Hb_000714_050 Hb_010315_090 Hb_010315_090 Hb_011512_060--Hb_010315_090 Hb_008595_010 Hb_008595_010 Hb_011512_060--Hb_008595_010 Hb_006449_050 Hb_006449_050 Hb_011512_060--Hb_006449_050 Hb_000317_150 Hb_000317_150 Hb_009558_040--Hb_000317_150 Hb_027073_060 Hb_027073_060 Hb_009558_040--Hb_027073_060 Hb_002499_070 Hb_002499_070 Hb_009558_040--Hb_002499_070 Hb_007885_070 Hb_007885_070 Hb_009558_040--Hb_007885_070 Hb_003540_160 Hb_003540_160 Hb_009558_040--Hb_003540_160 Hb_000032_010 Hb_000032_010 Hb_000856_140--Hb_000032_010 Hb_019153_020 Hb_019153_020 Hb_000856_140--Hb_019153_020 Hb_003040_020 Hb_003040_020 Hb_000856_140--Hb_003040_020 Hb_004429_160 Hb_004429_160 Hb_000856_140--Hb_004429_160 Hb_148909_030 Hb_148909_030 Hb_000856_140--Hb_148909_030 Hb_004627_060 Hb_004627_060 Hb_000856_140--Hb_004627_060 Hb_010381_060 Hb_010381_060 Hb_000714_050--Hb_010381_060 Hb_001235_200 Hb_001235_200 Hb_000714_050--Hb_001235_200 Hb_000320_200 Hb_000320_200 Hb_000714_050--Hb_000320_200 Hb_005892_030 Hb_005892_030 Hb_000714_050--Hb_005892_030 Hb_000329_090 Hb_000329_090 Hb_000714_050--Hb_000329_090 Hb_000329_130 Hb_000329_130 Hb_000714_050--Hb_000329_130 Hb_010315_090--Hb_000329_130 Hb_001417_050 Hb_001417_050 Hb_010315_090--Hb_001417_050 Hb_001493_040 Hb_001493_040 Hb_010315_090--Hb_001493_040 Hb_010315_090--Hb_019153_020 Hb_004884_010 Hb_004884_010 Hb_010315_090--Hb_004884_010 Hb_140049_020 Hb_140049_020 Hb_010315_090--Hb_140049_020 Hb_001300_070 Hb_001300_070 Hb_008595_010--Hb_001300_070 Hb_000768_190 Hb_000768_190 Hb_008595_010--Hb_000768_190 Hb_000059_150 Hb_000059_150 Hb_008595_010--Hb_000059_150 Hb_002587_020 Hb_002587_020 Hb_008595_010--Hb_002587_020 Hb_008595_010--Hb_010381_060 Hb_000037_110 Hb_000037_110 Hb_008595_010--Hb_000037_110 Hb_006449_050--Hb_010381_060 Hb_002221_050 Hb_002221_050 Hb_006449_050--Hb_002221_050 Hb_000035_040 Hb_000035_040 Hb_006449_050--Hb_000035_040 Hb_001599_030 Hb_001599_030 Hb_006449_050--Hb_001599_030 Hb_006449_050--Hb_001235_200 Hb_006449_050--Hb_000714_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.8894 41.9563 29.1874 14.3177 102.035 55.7361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.2439 20.5874 21.8451 35.5891 39.8175

CAGE analysis