Hb_011512_070

Information

Type transcription factor
Description TF Family: PHD
Location Contig11512: 39827-46378
Sequence    

Annotation

kegg
ID rcu:RCOM_1023520
description Inhibitor of growth protein, putative
nr
ID XP_002518170.1
description Inhibitor of growth protein, putative [Ricinus communis]
swissprot
ID Q9LIQ6
description PHD finger protein ING1 OS=Arabidopsis thaliana GN=ING1 PE=1 SV=1
trembl
ID B9RWQ1
description PHD finger protein ING OS=Ricinus communis GN=RCOM_1023520 PE=3 SV=1
Gene Ontology
ID GO:0005634
description phd finger protein ing1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04567: 44507-46135
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011512_070 0.0 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
2 Hb_000656_240 0.0599304869 - - proteasome subunit alpha type, putative [Ricinus communis]
3 Hb_002226_060 0.0603763096 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
4 Hb_000529_030 0.0669399214 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_010098_050 0.0726421739 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
6 Hb_007304_090 0.0743989356 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
7 Hb_000205_090 0.0749893303 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
8 Hb_000193_110 0.0767420964 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
9 Hb_001279_080 0.0771293457 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
10 Hb_001341_150 0.0782665463 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
11 Hb_000633_020 0.0786528997 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
12 Hb_000025_620 0.0791930337 - - hypothetical protein POPTR_0009s05200g [Populus trichocarpa]
13 Hb_003018_010 0.0797773344 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
14 Hb_008554_060 0.0800359331 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
15 Hb_003942_020 0.0806330421 - - PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
16 Hb_000035_370 0.0808157347 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001195_480 0.0811649987 - - cop9 complex subunit, putative [Ricinus communis]
18 Hb_003052_190 0.0814494734 - - PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
19 Hb_003064_020 0.0823491333 - - hypothetical protein JCGZ_21649 [Jatropha curcas]
20 Hb_001504_110 0.0823855357 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]

Gene co-expression network

sample Hb_011512_070 Hb_011512_070 Hb_000656_240 Hb_000656_240 Hb_011512_070--Hb_000656_240 Hb_002226_060 Hb_002226_060 Hb_011512_070--Hb_002226_060 Hb_000529_030 Hb_000529_030 Hb_011512_070--Hb_000529_030 Hb_010098_050 Hb_010098_050 Hb_011512_070--Hb_010098_050 Hb_007304_090 Hb_007304_090 Hb_011512_070--Hb_007304_090 Hb_000205_090 Hb_000205_090 Hb_011512_070--Hb_000205_090 Hb_004116_190 Hb_004116_190 Hb_000656_240--Hb_004116_190 Hb_001504_110 Hb_001504_110 Hb_000656_240--Hb_001504_110 Hb_001195_480 Hb_001195_480 Hb_000656_240--Hb_001195_480 Hb_000580_090 Hb_000580_090 Hb_000656_240--Hb_000580_090 Hb_008554_060 Hb_008554_060 Hb_000656_240--Hb_008554_060 Hb_002226_060--Hb_000656_240 Hb_001341_150 Hb_001341_150 Hb_002226_060--Hb_001341_150 Hb_003018_010 Hb_003018_010 Hb_002226_060--Hb_003018_010 Hb_002226_060--Hb_000529_030 Hb_001279_080 Hb_001279_080 Hb_002226_060--Hb_001279_080 Hb_000236_390 Hb_000236_390 Hb_000529_030--Hb_000236_390 Hb_000529_030--Hb_001195_480 Hb_150651_040 Hb_150651_040 Hb_000529_030--Hb_150651_040 Hb_000529_030--Hb_000656_240 Hb_006615_240 Hb_006615_240 Hb_010098_050--Hb_006615_240 Hb_010098_050--Hb_001341_150 Hb_010098_050--Hb_000205_090 Hb_019280_050 Hb_019280_050 Hb_010098_050--Hb_019280_050 Hb_000431_170 Hb_000431_170 Hb_010098_050--Hb_000431_170 Hb_008013_050 Hb_008013_050 Hb_010098_050--Hb_008013_050 Hb_027380_050 Hb_027380_050 Hb_007304_090--Hb_027380_050 Hb_007220_010 Hb_007220_010 Hb_007304_090--Hb_007220_010 Hb_006153_110 Hb_006153_110 Hb_007304_090--Hb_006153_110 Hb_003669_020 Hb_003669_020 Hb_007304_090--Hb_003669_020 Hb_000046_050 Hb_000046_050 Hb_007304_090--Hb_000046_050 Hb_004109_170 Hb_004109_170 Hb_000205_090--Hb_004109_170 Hb_118419_010 Hb_118419_010 Hb_000205_090--Hb_118419_010 Hb_000236_040 Hb_000236_040 Hb_000205_090--Hb_000236_040 Hb_000205_090--Hb_000656_240 Hb_000205_090--Hb_004116_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.94345 3.90119 7.88314 4.22127 4.07108 4.51911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.63959 14.0724 5.91775 5.20732 5.17934

CAGE analysis