Hb_011512_080

Information

Type -
Description -
Location Contig11512: 47717-48457
Sequence    

Annotation

kegg
ID pop:POPTR_0003s17290g
description POPTRDRAFT_757922; disease resistance-responsive family protein
nr
ID KDP20338.1
description hypothetical protein JCGZ_06424 [Jatropha curcas]
swissprot
ID Q7Y225
description Dirigent protein 16 OS=Arabidopsis thaliana GN=DIR16 PE=2 SV=1
trembl
ID A0A067JC71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06424 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04568: 47690-47848
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011512_080 0.0 - - hypothetical protein JCGZ_06424 [Jatropha curcas]
2 Hb_004970_090 0.0809295758 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
3 Hb_112798_020 0.0912561621 - - dnajc14 protein, putative [Ricinus communis]
4 Hb_002272_020 0.0944646088 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
5 Hb_000563_230 0.0950070792 - - phospholipase d zeta, putative [Ricinus communis]
6 Hb_005288_170 0.0980864022 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Populus euphratica]
7 Hb_000275_170 0.1045531525 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
8 Hb_005675_040 0.1049330826 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
9 Hb_031527_020 0.1055635243 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
10 Hb_003052_140 0.1055895174 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
11 Hb_000487_210 0.1057505079 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
12 Hb_000092_020 0.1057630628 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
13 Hb_003371_150 0.1075390974 - - PREDICTED: serine/threonine-protein kinase 10 [Jatropha curcas]
14 Hb_002585_040 0.1087701376 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
15 Hb_000732_120 0.1101192068 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
16 Hb_005489_080 0.110291799 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005541_010 0.1108587549 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
18 Hb_001348_150 0.1121437342 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
19 Hb_000679_310 0.1135633145 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
20 Hb_003117_020 0.1141119733 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]

Gene co-expression network

sample Hb_011512_080 Hb_011512_080 Hb_004970_090 Hb_004970_090 Hb_011512_080--Hb_004970_090 Hb_112798_020 Hb_112798_020 Hb_011512_080--Hb_112798_020 Hb_002272_020 Hb_002272_020 Hb_011512_080--Hb_002272_020 Hb_000563_230 Hb_000563_230 Hb_011512_080--Hb_000563_230 Hb_005288_170 Hb_005288_170 Hb_011512_080--Hb_005288_170 Hb_000275_170 Hb_000275_170 Hb_011512_080--Hb_000275_170 Hb_017491_030 Hb_017491_030 Hb_004970_090--Hb_017491_030 Hb_004970_090--Hb_112798_020 Hb_005489_080 Hb_005489_080 Hb_004970_090--Hb_005489_080 Hb_000732_120 Hb_000732_120 Hb_004970_090--Hb_000732_120 Hb_001104_160 Hb_001104_160 Hb_004970_090--Hb_001104_160 Hb_002248_080 Hb_002248_080 Hb_112798_020--Hb_002248_080 Hb_112798_020--Hb_017491_030 Hb_000529_020 Hb_000529_020 Hb_112798_020--Hb_000529_020 Hb_000796_210 Hb_000796_210 Hb_112798_020--Hb_000796_210 Hb_000256_190 Hb_000256_190 Hb_112798_020--Hb_000256_190 Hb_111198_010 Hb_111198_010 Hb_002272_020--Hb_111198_010 Hb_000076_160 Hb_000076_160 Hb_002272_020--Hb_000076_160 Hb_003299_030 Hb_003299_030 Hb_002272_020--Hb_003299_030 Hb_002078_220 Hb_002078_220 Hb_002272_020--Hb_002078_220 Hb_003117_020 Hb_003117_020 Hb_002272_020--Hb_003117_020 Hb_001946_040 Hb_001946_040 Hb_002272_020--Hb_001946_040 Hb_152175_010 Hb_152175_010 Hb_000563_230--Hb_152175_010 Hb_003125_120 Hb_003125_120 Hb_000563_230--Hb_003125_120 Hb_008453_140 Hb_008453_140 Hb_000563_230--Hb_008453_140 Hb_014109_040 Hb_014109_040 Hb_000563_230--Hb_014109_040 Hb_003001_080 Hb_003001_080 Hb_000563_230--Hb_003001_080 Hb_000340_400 Hb_000340_400 Hb_000563_230--Hb_000340_400 Hb_000705_170 Hb_000705_170 Hb_005288_170--Hb_000705_170 Hb_000049_260 Hb_000049_260 Hb_005288_170--Hb_000049_260 Hb_004236_050 Hb_004236_050 Hb_005288_170--Hb_004236_050 Hb_000861_080 Hb_000861_080 Hb_005288_170--Hb_000861_080 Hb_003929_280 Hb_003929_280 Hb_005288_170--Hb_003929_280 Hb_000454_130 Hb_000454_130 Hb_005288_170--Hb_000454_130 Hb_004032_430 Hb_004032_430 Hb_000275_170--Hb_004032_430 Hb_000220_040 Hb_000220_040 Hb_000275_170--Hb_000220_040 Hb_004310_150 Hb_004310_150 Hb_000275_170--Hb_004310_150 Hb_000275_170--Hb_112798_020 Hb_005694_110 Hb_005694_110 Hb_000275_170--Hb_005694_110 Hb_000959_210 Hb_000959_210 Hb_000275_170--Hb_000959_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0419 1.38304 0.503172 0.602225 0.937061 0.742685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.598453 1.23509 0.422381 0.477464 0.468421

CAGE analysis