Hb_011512_160

Information

Type -
Description -
Location Contig11512: 94864-95993
Sequence    

Annotation

kegg
ID rcu:RCOM_1278170
description hypothetical protein
nr
ID XP_002527653.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNT4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1278170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04576: 94980-95407 , PASA_asmbl_04577: 95431-95936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011512_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003055_110 0.207464775 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004116_100 0.2100758029 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
4 Hb_089889_010 0.2138303069 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
5 Hb_000008_380 0.2188163902 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000740_040 0.2216907892 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
7 Hb_068194_010 0.2235282994 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
8 Hb_000723_340 0.2246142812 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
9 Hb_014720_010 0.2249055369 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001975_130 0.2267705933 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 6 isoform X1 [Populus euphratica]
11 Hb_118282_010 0.2295613037 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
12 Hb_001332_030 0.2305029429 - - hypothetical protein JCGZ_21111 [Jatropha curcas]
13 Hb_002045_190 0.2308178042 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
14 Hb_003399_100 0.2324325934 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
15 Hb_005375_050 0.2386197592 - - inorganic pyrophosphatase, putative [Ricinus communis]
16 Hb_001959_010 0.239826677 - - myosin XI, putative [Ricinus communis]
17 Hb_000487_120 0.2410382974 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000189_170 0.24349629 - - calcium ion binding protein, putative [Ricinus communis]
19 Hb_114310_100 0.2440440401 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
20 Hb_154038_020 0.2462534698 - - hypothetical protein JCGZ_05648 [Jatropha curcas]

Gene co-expression network

sample Hb_011512_160 Hb_011512_160 Hb_003055_110 Hb_003055_110 Hb_011512_160--Hb_003055_110 Hb_004116_100 Hb_004116_100 Hb_011512_160--Hb_004116_100 Hb_089889_010 Hb_089889_010 Hb_011512_160--Hb_089889_010 Hb_000008_380 Hb_000008_380 Hb_011512_160--Hb_000008_380 Hb_000740_040 Hb_000740_040 Hb_011512_160--Hb_000740_040 Hb_068194_010 Hb_068194_010 Hb_011512_160--Hb_068194_010 Hb_000594_070 Hb_000594_070 Hb_003055_110--Hb_000594_070 Hb_000189_170 Hb_000189_170 Hb_003055_110--Hb_000189_170 Hb_010172_110 Hb_010172_110 Hb_003055_110--Hb_010172_110 Hb_003055_110--Hb_068194_010 Hb_001437_280 Hb_001437_280 Hb_003055_110--Hb_001437_280 Hb_114310_100 Hb_114310_100 Hb_003055_110--Hb_114310_100 Hb_030627_070 Hb_030627_070 Hb_004116_100--Hb_030627_070 Hb_004116_100--Hb_000740_040 Hb_003077_150 Hb_003077_150 Hb_004116_100--Hb_003077_150 Hb_118282_010 Hb_118282_010 Hb_004116_100--Hb_118282_010 Hb_002045_190 Hb_002045_190 Hb_004116_100--Hb_002045_190 Hb_004116_100--Hb_068194_010 Hb_003399_100 Hb_003399_100 Hb_089889_010--Hb_003399_100 Hb_089889_010--Hb_002045_190 Hb_001975_130 Hb_001975_130 Hb_089889_010--Hb_001975_130 Hb_005375_050 Hb_005375_050 Hb_089889_010--Hb_005375_050 Hb_001890_020 Hb_001890_020 Hb_089889_010--Hb_001890_020 Hb_089889_010--Hb_030627_070 Hb_000878_140 Hb_000878_140 Hb_000008_380--Hb_000878_140 Hb_000155_090 Hb_000155_090 Hb_000008_380--Hb_000155_090 Hb_014720_010 Hb_014720_010 Hb_000008_380--Hb_014720_010 Hb_000008_380--Hb_005375_050 Hb_000130_450 Hb_000130_450 Hb_000008_380--Hb_000130_450 Hb_001073_080 Hb_001073_080 Hb_000740_040--Hb_001073_080 Hb_000740_040--Hb_118282_010 Hb_001329_090 Hb_001329_090 Hb_000740_040--Hb_001329_090 Hb_000005_110 Hb_000005_110 Hb_000740_040--Hb_000005_110 Hb_000035_240 Hb_000035_240 Hb_000740_040--Hb_000035_240 Hb_003126_130 Hb_003126_130 Hb_000740_040--Hb_003126_130 Hb_000676_020 Hb_000676_020 Hb_068194_010--Hb_000676_020 Hb_000820_140 Hb_000820_140 Hb_068194_010--Hb_000820_140 Hb_006445_020 Hb_006445_020 Hb_068194_010--Hb_006445_020 Hb_009851_010 Hb_009851_010 Hb_068194_010--Hb_009851_010 Hb_001102_050 Hb_001102_050 Hb_068194_010--Hb_001102_050 Hb_001322_230 Hb_001322_230 Hb_068194_010--Hb_001322_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.144467 0.0926883 9.34458 1.85753 0.0225729 0.109001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.31902 5.12395 3.34108 1.5044 2.38618

CAGE analysis