Hb_011515_020

Information

Type -
Description -
Location Contig11515: 3516-4306
Sequence    

Annotation

kegg
ID rcu:RCOM_0384540
description Dehydration-responsive element-binding protein 1B, putative
nr
ID XP_012066513.1
description PREDICTED: dehydration-responsive element-binding protein 1F-like [Jatropha curcas]
swissprot
ID Q8S9Z5
description Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. japonica GN=DREB1F PE=3 SV=1
trembl
ID A0A067L2K3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23631 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011515_020 0.0 - - PREDICTED: dehydration-responsive element-binding protein 1F-like [Jatropha curcas]
2 Hb_001021_190 0.0026712322 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
3 Hb_003784_030 0.0055023117 - - conserved hypothetical protein [Ricinus communis]
4 Hb_077165_010 0.0067746847 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000005_150 0.0076407263 - - PREDICTED: cation/H(+) antiporter 10-like [Jatropha curcas]
6 Hb_002383_010 0.0086625923 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
7 Hb_012758_020 0.0129868404 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
8 Hb_168451_010 0.013479419 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
9 Hb_053224_010 0.0138032219 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
10 Hb_005858_010 0.0149124562 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
11 Hb_032907_020 0.0190310345 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_000295_140 0.0198600714 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
13 Hb_000245_010 0.0214715212 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Populus euphratica]
14 Hb_086720_010 0.0224001668 - - CTV.19 [Citrus trifoliata]
15 Hb_007407_020 0.0234590069 - - ATP binding protein, putative [Ricinus communis]
16 Hb_001414_070 0.0268474728 - - Zinc finger protein GIS2 [Medicago truncatula]
17 Hb_007138_020 0.0270247982 - - hypothetical protein POPTR_0019s09630g [Populus trichocarpa]
18 Hb_014776_010 0.0279738151 - - PREDICTED: receptor-like protein kinase 5 [Jatropha curcas]
19 Hb_088508_010 0.0285104165 - - cytochrome P450, putative [Ricinus communis]
20 Hb_014223_030 0.0292794673 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220 [Jatropha curcas]

Gene co-expression network

sample Hb_011515_020 Hb_011515_020 Hb_001021_190 Hb_001021_190 Hb_011515_020--Hb_001021_190 Hb_003784_030 Hb_003784_030 Hb_011515_020--Hb_003784_030 Hb_077165_010 Hb_077165_010 Hb_011515_020--Hb_077165_010 Hb_000005_150 Hb_000005_150 Hb_011515_020--Hb_000005_150 Hb_002383_010 Hb_002383_010 Hb_011515_020--Hb_002383_010 Hb_012758_020 Hb_012758_020 Hb_011515_020--Hb_012758_020 Hb_001021_190--Hb_003784_030 Hb_001021_190--Hb_077165_010 Hb_001021_190--Hb_000005_150 Hb_168451_010 Hb_168451_010 Hb_001021_190--Hb_168451_010 Hb_053224_010 Hb_053224_010 Hb_001021_190--Hb_053224_010 Hb_003784_030--Hb_168451_010 Hb_003784_030--Hb_053224_010 Hb_003784_030--Hb_077165_010 Hb_003784_030--Hb_000005_150 Hb_077165_010--Hb_000005_150 Hb_077165_010--Hb_002383_010 Hb_077165_010--Hb_012758_020 Hb_005858_010 Hb_005858_010 Hb_077165_010--Hb_005858_010 Hb_000005_150--Hb_002383_010 Hb_000005_150--Hb_012758_020 Hb_000005_150--Hb_005858_010 Hb_002383_010--Hb_012758_020 Hb_002383_010--Hb_005858_010 Hb_002383_010--Hb_001021_190 Hb_012758_020--Hb_005858_010 Hb_000245_010 Hb_000245_010 Hb_012758_020--Hb_000245_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.250948 0.408242 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis