Hb_011519_010

Information

Type -
Description -
Location Contig11519: 25034-30267
Sequence    

Annotation

kegg
ID rcu:RCOM_0569900
description hypothetical protein
nr
ID XP_012086269.1
description PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
swissprot
ID B0BN95
description Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1
trembl
ID B9SXS9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0569900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04582: 28004-28215 , PASA_asmbl_04583: 28654-28915 , PASA_asmbl_04584: 29817-30293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011519_010 0.0 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
2 Hb_004162_130 0.0733489979 - - conserved hypothetical protein [Ricinus communis]
3 Hb_032202_140 0.0782226646 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
4 Hb_002600_020 0.0789704771 - - unnamed protein product [Vitis vinifera]
5 Hb_000917_060 0.0828787382 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
6 Hb_000465_160 0.0848977803 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
7 Hb_004410_080 0.0853544637 - - cellular nucleic acid binding protein, putative [Ricinus communis]
8 Hb_050514_010 0.0855388236 - - hypothetical protein 29 [Hevea brasiliensis]
9 Hb_003813_030 0.0870304001 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
10 Hb_138585_090 0.0886016294 - - Long chain base2 isoform 2 [Theobroma cacao]
11 Hb_000000_210 0.0902365447 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
12 Hb_001437_150 0.0922558119 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
13 Hb_000175_340 0.0937689069 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
14 Hb_001012_010 0.0943743992 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
15 Hb_180424_010 0.0953754633 - - Charged multivesicular body protein, putative [Ricinus communis]
16 Hb_011995_010 0.0966276966 - - dc50, putative [Ricinus communis]
17 Hb_000853_430 0.0968819834 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
18 Hb_000768_090 0.0975231571 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
19 Hb_004109_170 0.0995241344 - - PREDICTED: probable ribokinase [Jatropha curcas]
20 Hb_012286_030 0.0999310573 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]

Gene co-expression network

sample Hb_011519_010 Hb_011519_010 Hb_004162_130 Hb_004162_130 Hb_011519_010--Hb_004162_130 Hb_032202_140 Hb_032202_140 Hb_011519_010--Hb_032202_140 Hb_002600_020 Hb_002600_020 Hb_011519_010--Hb_002600_020 Hb_000917_060 Hb_000917_060 Hb_011519_010--Hb_000917_060 Hb_000465_160 Hb_000465_160 Hb_011519_010--Hb_000465_160 Hb_004410_080 Hb_004410_080 Hb_011519_010--Hb_004410_080 Hb_000375_350 Hb_000375_350 Hb_004162_130--Hb_000375_350 Hb_164010_040 Hb_164010_040 Hb_004162_130--Hb_164010_040 Hb_001300_150 Hb_001300_150 Hb_004162_130--Hb_001300_150 Hb_003728_060 Hb_003728_060 Hb_004162_130--Hb_003728_060 Hb_000733_200 Hb_000733_200 Hb_004162_130--Hb_000733_200 Hb_032202_140--Hb_002600_020 Hb_002013_020 Hb_002013_020 Hb_032202_140--Hb_002013_020 Hb_001163_050 Hb_001163_050 Hb_032202_140--Hb_001163_050 Hb_003001_080 Hb_003001_080 Hb_032202_140--Hb_003001_080 Hb_001456_060 Hb_001456_060 Hb_032202_140--Hb_001456_060 Hb_011995_010 Hb_011995_010 Hb_032202_140--Hb_011995_010 Hb_000181_110 Hb_000181_110 Hb_002600_020--Hb_000181_110 Hb_002530_030 Hb_002530_030 Hb_002600_020--Hb_002530_030 Hb_002600_020--Hb_001163_050 Hb_000684_380 Hb_000684_380 Hb_002600_020--Hb_000684_380 Hb_153553_030 Hb_153553_030 Hb_002600_020--Hb_153553_030 Hb_000866_260 Hb_000866_260 Hb_000917_060--Hb_000866_260 Hb_000329_320 Hb_000329_320 Hb_000917_060--Hb_000329_320 Hb_017358_030 Hb_017358_030 Hb_000917_060--Hb_017358_030 Hb_000917_060--Hb_032202_140 Hb_000917_060--Hb_001163_050 Hb_000917_060--Hb_002013_020 Hb_001799_210 Hb_001799_210 Hb_000465_160--Hb_001799_210 Hb_000465_160--Hb_001300_150 Hb_001009_270 Hb_001009_270 Hb_000465_160--Hb_001009_270 Hb_000260_030 Hb_000260_030 Hb_000465_160--Hb_000260_030 Hb_003177_030 Hb_003177_030 Hb_000465_160--Hb_003177_030 Hb_004109_170 Hb_004109_170 Hb_000465_160--Hb_004109_170 Hb_000633_020 Hb_000633_020 Hb_004410_080--Hb_000633_020 Hb_000656_240 Hb_000656_240 Hb_004410_080--Hb_000656_240 Hb_004157_020 Hb_004157_020 Hb_004410_080--Hb_004157_020 Hb_032264_070 Hb_032264_070 Hb_004410_080--Hb_032264_070 Hb_000367_160 Hb_000367_160 Hb_004410_080--Hb_000367_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.50344 4.53758 8.77224 4.28349 5.45802 5.42414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.20374 8.06175 9.32197 3.23775 3.41714

CAGE analysis