Hb_011525_020

Information

Type -
Description -
Location Contig11525: 18523-18858
Sequence    

Annotation

kegg
ID pop:POPTR_0002s22060g
description POPTRDRAFT_645017; hypothetical protein
nr
ID XP_012080701.1
description PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KF26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13803 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 004_J21.ab1: 18268-18981 , 023_J08.ab1: 18334-18981 , 042_G15.ab1: 18292-18981

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011525_020 0.0 - - PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas]
2 Hb_003376_170 0.1322845202 - - PREDICTED: uncharacterized protein LOC105642198 isoform X2 [Jatropha curcas]
3 Hb_005217_020 0.1798378852 - - PREDICTED: ribosomal RNA processing protein 36 homolog isoform X2 [Jatropha curcas]
4 Hb_001675_060 0.1884860236 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
5 Hb_004545_050 0.1910839045 - - Cu/Zn superoxide dismutase [Hevea brasiliensis]
6 Hb_000441_230 0.192435478 - - unnamed protein product [Coffea canephora]
7 Hb_003360_020 0.1932914673 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
8 Hb_001017_100 0.1946320678 - - PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]
9 Hb_000565_020 0.1961926813 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
10 Hb_002796_030 0.1994015504 - - -
11 Hb_005271_030 0.1994758978 - - copper-transporting atpase p-type, putative [Ricinus communis]
12 Hb_064201_010 0.2000198117 - - hypothetical protein RCOM_1685970 [Ricinus communis]
13 Hb_000454_030 0.2021180287 - - -
14 Hb_003226_170 0.203987146 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
15 Hb_005016_150 0.2057367158 - - -
16 Hb_000213_060 0.2081845211 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
17 Hb_000580_060 0.2108764582 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
18 Hb_000352_130 0.2112943481 - - hypothetical protein CISIN_1g0419111mg, partial [Citrus sinensis]
19 Hb_000185_090 0.2116151965 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
20 Hb_002506_110 0.2127420875 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]

Gene co-expression network

sample Hb_011525_020 Hb_011525_020 Hb_003376_170 Hb_003376_170 Hb_011525_020--Hb_003376_170 Hb_005217_020 Hb_005217_020 Hb_011525_020--Hb_005217_020 Hb_001675_060 Hb_001675_060 Hb_011525_020--Hb_001675_060 Hb_004545_050 Hb_004545_050 Hb_011525_020--Hb_004545_050 Hb_000441_230 Hb_000441_230 Hb_011525_020--Hb_000441_230 Hb_003360_020 Hb_003360_020 Hb_011525_020--Hb_003360_020 Hb_064201_010 Hb_064201_010 Hb_003376_170--Hb_064201_010 Hb_003376_170--Hb_005217_020 Hb_005016_150 Hb_005016_150 Hb_003376_170--Hb_005016_150 Hb_000352_130 Hb_000352_130 Hb_003376_170--Hb_000352_130 Hb_000454_030 Hb_000454_030 Hb_003376_170--Hb_000454_030 Hb_000264_060 Hb_000264_060 Hb_005217_020--Hb_000264_060 Hb_002837_070 Hb_002837_070 Hb_005217_020--Hb_002837_070 Hb_000270_450 Hb_000270_450 Hb_005217_020--Hb_000270_450 Hb_001523_010 Hb_001523_010 Hb_005217_020--Hb_001523_010 Hb_000172_530 Hb_000172_530 Hb_005217_020--Hb_000172_530 Hb_009615_110 Hb_009615_110 Hb_005217_020--Hb_009615_110 Hb_001675_060--Hb_005016_150 Hb_003226_170 Hb_003226_170 Hb_001675_060--Hb_003226_170 Hb_001513_020 Hb_001513_020 Hb_001675_060--Hb_001513_020 Hb_000213_060 Hb_000213_060 Hb_001675_060--Hb_000213_060 Hb_001477_010 Hb_001477_010 Hb_001675_060--Hb_001477_010 Hb_000256_270 Hb_000256_270 Hb_001675_060--Hb_000256_270 Hb_000056_120 Hb_000056_120 Hb_004545_050--Hb_000056_120 Hb_004545_050--Hb_000441_230 Hb_002506_110 Hb_002506_110 Hb_004545_050--Hb_002506_110 Hb_001017_100 Hb_001017_100 Hb_004545_050--Hb_001017_100 Hb_000252_090 Hb_000252_090 Hb_004545_050--Hb_000252_090 Hb_000329_540 Hb_000329_540 Hb_000441_230--Hb_000329_540 Hb_003540_140 Hb_003540_140 Hb_000441_230--Hb_003540_140 Hb_000441_230--Hb_002506_110 Hb_000441_230--Hb_003226_170 Hb_005271_030 Hb_005271_030 Hb_000441_230--Hb_005271_030 Hb_000580_060 Hb_000580_060 Hb_000441_230--Hb_000580_060 Hb_002253_110 Hb_002253_110 Hb_003360_020--Hb_002253_110 Hb_003360_020--Hb_000441_230 Hb_003360_020--Hb_002506_110 Hb_003360_020--Hb_000580_060 Hb_000033_060 Hb_000033_060 Hb_003360_020--Hb_000033_060 Hb_010290_020 Hb_010290_020 Hb_003360_020--Hb_010290_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
227.474 25.3782 2.41345 28.1652 273.389 396.702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
149.264 32.3729 0 1.31515 18.42

CAGE analysis