Hb_011534_030

Information

Type -
Description -
Location Contig11534: 24948-42738
Sequence    

Annotation

kegg
ID pop:POPTR_0008s08530g
description POPTRDRAFT_874112; hypothetical protein
nr
ID XP_002312241.2
description hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
swissprot
ID Q58FY4
description U-box domain-containing protein 63 OS=Arabidopsis thaliana GN=PUB63 PE=2 SV=1
trembl
ID B9HI63
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s08530g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04636: 25019-42804 , PASA_asmbl_04637: 25425-38402 , PASA_asmbl_04638: 40379-42728 , PASA_asmbl_04640: 35290-35582
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011534_030 0.0 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
2 Hb_172932_010 0.057321708 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000617_150 0.0675540395 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
4 Hb_003053_020 0.0734401899 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
5 Hb_019263_020 0.0748560184 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
6 Hb_009113_070 0.0766404305 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
7 Hb_001454_190 0.0771752832 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
8 Hb_001235_030 0.0822172092 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
9 Hb_114336_020 0.0831601301 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
10 Hb_002235_280 0.0841704617 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
11 Hb_000373_130 0.0864385767 - - PREDICTED: protein FAM188A [Jatropha curcas]
12 Hb_000398_040 0.0871435782 - - Auxin response factor, putative [Ricinus communis]
13 Hb_010608_050 0.0883516577 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
14 Hb_001014_230 0.0894322874 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
15 Hb_002307_170 0.0905168458 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
16 Hb_005162_070 0.0915257775 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003688_150 0.0922980371 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
18 Hb_013607_040 0.0933032642 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
19 Hb_005568_120 0.0936536058 - - Prephenate dehydratase [Hevea brasiliensis]
20 Hb_028515_010 0.0945864969 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011534_030 Hb_011534_030 Hb_172932_010 Hb_172932_010 Hb_011534_030--Hb_172932_010 Hb_000617_150 Hb_000617_150 Hb_011534_030--Hb_000617_150 Hb_003053_020 Hb_003053_020 Hb_011534_030--Hb_003053_020 Hb_019263_020 Hb_019263_020 Hb_011534_030--Hb_019263_020 Hb_009113_070 Hb_009113_070 Hb_011534_030--Hb_009113_070 Hb_001454_190 Hb_001454_190 Hb_011534_030--Hb_001454_190 Hb_172932_010--Hb_001454_190 Hb_172932_010--Hb_000617_150 Hb_172932_010--Hb_009113_070 Hb_086639_030 Hb_086639_030 Hb_172932_010--Hb_086639_030 Hb_002235_280 Hb_002235_280 Hb_172932_010--Hb_002235_280 Hb_000120_680 Hb_000120_680 Hb_000617_150--Hb_000120_680 Hb_001699_130 Hb_001699_130 Hb_000617_150--Hb_001699_130 Hb_000617_150--Hb_001454_190 Hb_008695_100 Hb_008695_100 Hb_000617_150--Hb_008695_100 Hb_000783_020 Hb_000783_020 Hb_003053_020--Hb_000783_020 Hb_003697_040 Hb_003697_040 Hb_003053_020--Hb_003697_040 Hb_003053_020--Hb_019263_020 Hb_000985_030 Hb_000985_030 Hb_003053_020--Hb_000985_030 Hb_007904_260 Hb_007904_260 Hb_003053_020--Hb_007904_260 Hb_013607_040 Hb_013607_040 Hb_019263_020--Hb_013607_040 Hb_019263_020--Hb_002235_280 Hb_002284_200 Hb_002284_200 Hb_019263_020--Hb_002284_200 Hb_000373_130 Hb_000373_130 Hb_019263_020--Hb_000373_130 Hb_000398_040 Hb_000398_040 Hb_009113_070--Hb_000398_040 Hb_009113_070--Hb_000617_150 Hb_000841_020 Hb_000841_020 Hb_009113_070--Hb_000841_020 Hb_000143_030 Hb_000143_030 Hb_009113_070--Hb_000143_030 Hb_012325_020 Hb_012325_020 Hb_001454_190--Hb_012325_020 Hb_016901_010 Hb_016901_010 Hb_001454_190--Hb_016901_010 Hb_000002_050 Hb_000002_050 Hb_001454_190--Hb_000002_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.98825 6.46882 5.0172 6.85226 7.83115 12.3856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0037 21.9578 27.5767 12.1107 11.9695

CAGE analysis