Hb_011537_010

Information

Type -
Description -
Location Contig11537: 16475-17261
Sequence    

Annotation

kegg
ID pop:POPTR_0011s14760g
description POPTRDRAFT_569194; SNARE-associated family protein
nr
ID XP_012087432.1
description PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JMC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22666 PE=4 SV=1
Gene Ontology
ID GO:0031083
description snare-associated isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04642: 15679-16125 , PASA_asmbl_04643: 16535-18610
cDNA
(Sanger)
(ID:Location)		 027_H17.ab1: 16547-18405

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011537_010 0.0 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
2 Hb_003688_100 0.0783884409 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
3 Hb_000392_270 0.0847665999 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
4 Hb_005489_130 0.0852698095 - - calmodulin, putative [Ricinus communis]
5 Hb_000045_130 0.0856923245 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
6 Hb_011794_090 0.0877565986 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
7 Hb_003551_020 0.0884471047 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
8 Hb_004722_060 0.0885848441 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
9 Hb_159558_030 0.0895214516 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
10 Hb_003878_190 0.0900024656 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
11 Hb_026198_050 0.0901820223 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
12 Hb_000538_020 0.0928620899 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
13 Hb_009767_120 0.0938857325 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
14 Hb_001246_090 0.0949894465 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
15 Hb_000500_130 0.095771083 - - small GTPase [Hevea brasiliensis]
16 Hb_012340_080 0.0958116633 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
17 Hb_002553_020 0.0977073107 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004884_220 0.0993737113 - - hypothetical protein 29 [Hevea brasiliensis]
19 Hb_000690_080 0.1008730491 transcription factor TF Family: HB -
20 Hb_001369_650 0.1009424794 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]

Gene co-expression network

sample Hb_011537_010 Hb_011537_010 Hb_003688_100 Hb_003688_100 Hb_011537_010--Hb_003688_100 Hb_000392_270 Hb_000392_270 Hb_011537_010--Hb_000392_270 Hb_005489_130 Hb_005489_130 Hb_011537_010--Hb_005489_130 Hb_000045_130 Hb_000045_130 Hb_011537_010--Hb_000045_130 Hb_011794_090 Hb_011794_090 Hb_011537_010--Hb_011794_090 Hb_003551_020 Hb_003551_020 Hb_011537_010--Hb_003551_020 Hb_003688_100--Hb_011794_090 Hb_001514_020 Hb_001514_020 Hb_003688_100--Hb_001514_020 Hb_004722_060 Hb_004722_060 Hb_003688_100--Hb_004722_060 Hb_010449_020 Hb_010449_020 Hb_003688_100--Hb_010449_020 Hb_003688_100--Hb_005489_130 Hb_000977_080 Hb_000977_080 Hb_000392_270--Hb_000977_080 Hb_001369_650 Hb_001369_650 Hb_000392_270--Hb_001369_650 Hb_003540_040 Hb_003540_040 Hb_000392_270--Hb_003540_040 Hb_000392_270--Hb_003551_020 Hb_003878_190 Hb_003878_190 Hb_000392_270--Hb_003878_190 Hb_011360_140 Hb_011360_140 Hb_000392_270--Hb_011360_140 Hb_005489_130--Hb_000045_130 Hb_005489_130--Hb_010449_020 Hb_005489_130--Hb_004722_060 Hb_000808_040 Hb_000808_040 Hb_005489_130--Hb_000808_040 Hb_159558_030 Hb_159558_030 Hb_005489_130--Hb_159558_030 Hb_000045_130--Hb_000977_080 Hb_000045_130--Hb_003551_020 Hb_000045_130--Hb_001369_650 Hb_000045_130--Hb_000392_270 Hb_000019_230 Hb_000019_230 Hb_000045_130--Hb_000019_230 Hb_004204_070 Hb_004204_070 Hb_011794_090--Hb_004204_070 Hb_002272_250 Hb_002272_250 Hb_011794_090--Hb_002272_250 Hb_000107_050 Hb_000107_050 Hb_011794_090--Hb_000107_050 Hb_011794_090--Hb_004722_060 Hb_000977_130 Hb_000977_130 Hb_011794_090--Hb_000977_130 Hb_003551_020--Hb_000019_230 Hb_003551_020--Hb_000977_080 Hb_003551_020--Hb_003878_190 Hb_000154_080 Hb_000154_080 Hb_003551_020--Hb_000154_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
94.7374 27.4209 27.3565 34.4958 106.257 77.0968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
92.3764 105.171 48.0921 24.0081 4.96953

CAGE analysis