Hb_011537_040

Information

Type -
Description -
Location Contig11537: 36765-38956
Sequence    

Annotation

kegg
ID pop:POPTR_0001s05140g
description POPTRDRAFT_547690; hypothetical protein
nr
ID XP_012087434.1
description PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
swissprot
ID Q9ZD73
description Uncharacterized protein RP471 OS=Rickettsia prowazekii (strain Madrid E) GN=RP471 PE=4 SV=1
trembl
ID A0A067K022
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22669 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04647: 36799-38877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011537_040 0.0 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
2 Hb_005271_070 0.0788495591 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
3 Hb_000258_410 0.0821118681 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
4 Hb_001956_120 0.085258716 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004374_010 0.0868165965 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
6 Hb_000282_150 0.0888601599 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
7 Hb_002851_060 0.0926087972 - - Clathrin light chain 2 -like protein [Gossypium arboreum]
8 Hb_164010_020 0.0954224703 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
9 Hb_000500_290 0.0955881121 - - bromodomain-containing protein, putative [Ricinus communis]
10 Hb_004096_170 0.0959778402 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
11 Hb_007441_340 0.0963209583 - - protein with unknown function [Ricinus communis]
12 Hb_003352_050 0.097063549 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
13 Hb_001946_260 0.1011737853 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
14 Hb_000176_110 0.1017754334 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
15 Hb_002044_090 0.1022589674 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
16 Hb_004724_430 0.1048271642 - - PREDICTED: F-box protein At2g27310 [Jatropha curcas]
17 Hb_000062_230 0.1064860823 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
18 Hb_000028_050 0.1072245774 - - aldose-1-epimerase, putative [Ricinus communis]
19 Hb_005015_010 0.1081213344 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
20 Hb_000172_120 0.1092385276 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011537_040 Hb_011537_040 Hb_005271_070 Hb_005271_070 Hb_011537_040--Hb_005271_070 Hb_000258_410 Hb_000258_410 Hb_011537_040--Hb_000258_410 Hb_001956_120 Hb_001956_120 Hb_011537_040--Hb_001956_120 Hb_004374_010 Hb_004374_010 Hb_011537_040--Hb_004374_010 Hb_000282_150 Hb_000282_150 Hb_011537_040--Hb_000282_150 Hb_002851_060 Hb_002851_060 Hb_011537_040--Hb_002851_060 Hb_005271_070--Hb_000258_410 Hb_164010_020 Hb_164010_020 Hb_005271_070--Hb_164010_020 Hb_005741_020 Hb_005741_020 Hb_005271_070--Hb_005741_020 Hb_000500_290 Hb_000500_290 Hb_005271_070--Hb_000500_290 Hb_005271_070--Hb_004374_010 Hb_008406_160 Hb_008406_160 Hb_000258_410--Hb_008406_160 Hb_000997_060 Hb_000997_060 Hb_000258_410--Hb_000997_060 Hb_000237_230 Hb_000237_230 Hb_000258_410--Hb_000237_230 Hb_000176_110 Hb_000176_110 Hb_000258_410--Hb_000176_110 Hb_001956_120--Hb_004374_010 Hb_000347_080 Hb_000347_080 Hb_001956_120--Hb_000347_080 Hb_000976_270 Hb_000976_270 Hb_001956_120--Hb_000976_270 Hb_000062_230 Hb_000062_230 Hb_001956_120--Hb_000062_230 Hb_001663_110 Hb_001663_110 Hb_001956_120--Hb_001663_110 Hb_000015_010 Hb_000015_010 Hb_004374_010--Hb_000015_010 Hb_004374_010--Hb_000062_230 Hb_017098_030 Hb_017098_030 Hb_004374_010--Hb_017098_030 Hb_002044_090 Hb_002044_090 Hb_004374_010--Hb_002044_090 Hb_001140_080 Hb_001140_080 Hb_000282_150--Hb_001140_080 Hb_000282_150--Hb_000500_290 Hb_000270_450 Hb_000270_450 Hb_000282_150--Hb_000270_450 Hb_012807_120 Hb_012807_120 Hb_000282_150--Hb_012807_120 Hb_004232_010 Hb_004232_010 Hb_000282_150--Hb_004232_010 Hb_044662_040 Hb_044662_040 Hb_002851_060--Hb_044662_040 Hb_002851_060--Hb_004374_010 Hb_002851_060--Hb_017098_030 Hb_002851_060--Hb_005271_070 Hb_178345_010 Hb_178345_010 Hb_002851_060--Hb_178345_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
92.6671 15.4931 10.827 11.6255 92.2048 80.1079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.1339 31.3692 18.9005 16.9545 6.42212

CAGE analysis