Hb_011537_090

Information

Type -
Description -
Location Contig11537: 111144-120750
Sequence    

Annotation

kegg
ID cic:CICLE_v10017967mg
description hypothetical protein
nr
ID KJB55326.1
description hypothetical protein B456_009G071100 [Gossypium raimondii]
swissprot
ID O64766
description Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1
trembl
ID A0A0D2TL20
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G071100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011537_090 0.0 - - hypothetical protein B456_009G071100 [Gossypium raimondii]
2 Hb_097889_010 0.0018964665 - - PREDICTED: uncharacterized protein LOC102584707 [Solanum tuberosum]
3 Hb_009188_010 0.003602674 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
4 Hb_008976_010 0.0050651163 - - -
5 Hb_000710_120 0.0054694545 - - hypothetical protein JCGZ_01844 [Jatropha curcas]
6 Hb_001309_030 0.0057342795 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_004019_100 0.0058759924 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
8 Hb_001972_020 0.0066444551 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_001817_190 0.0068159546 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_010783_010 0.0069275585 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_124540_020 0.0122389731 - - polyprotein [Citrus endogenous pararetrovirus]
12 Hb_090778_010 0.0134189453 - - PREDICTED: uncharacterized protein LOC105764482 [Gossypium raimondii]
13 Hb_011616_060 0.0136492698 - - PREDICTED: uncharacterized protein LOC105789623 [Gossypium raimondii]
14 Hb_001662_020 0.0137490872 - - PREDICTED: F-box protein SKIP23-like isoform X3 [Eucalyptus grandis]
15 Hb_026532_010 0.0158957899 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
16 Hb_186440_010 0.0807769575 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_027890_010 0.1190135908 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
18 Hb_031691_010 0.1231022961 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_012404_010 0.1411565751 - - -
20 Hb_012330_030 0.1484962103 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011537_090 Hb_011537_090 Hb_097889_010 Hb_097889_010 Hb_011537_090--Hb_097889_010 Hb_009188_010 Hb_009188_010 Hb_011537_090--Hb_009188_010 Hb_008976_010 Hb_008976_010 Hb_011537_090--Hb_008976_010 Hb_000710_120 Hb_000710_120 Hb_011537_090--Hb_000710_120 Hb_001309_030 Hb_001309_030 Hb_011537_090--Hb_001309_030 Hb_004019_100 Hb_004019_100 Hb_011537_090--Hb_004019_100 Hb_097889_010--Hb_009188_010 Hb_097889_010--Hb_008976_010 Hb_097889_010--Hb_000710_120 Hb_097889_010--Hb_001309_030 Hb_097889_010--Hb_004019_100 Hb_009188_010--Hb_008976_010 Hb_009188_010--Hb_000710_120 Hb_009188_010--Hb_001309_030 Hb_009188_010--Hb_004019_100 Hb_001972_020 Hb_001972_020 Hb_009188_010--Hb_001972_020 Hb_001817_190 Hb_001817_190 Hb_009188_010--Hb_001817_190 Hb_008976_010--Hb_000710_120 Hb_008976_010--Hb_001309_030 Hb_008976_010--Hb_004019_100 Hb_008976_010--Hb_001972_020 Hb_008976_010--Hb_001817_190 Hb_000710_120--Hb_001309_030 Hb_000710_120--Hb_004019_100 Hb_000710_120--Hb_001972_020 Hb_000710_120--Hb_001817_190 Hb_010783_010 Hb_010783_010 Hb_000710_120--Hb_010783_010 Hb_001309_030--Hb_004019_100 Hb_001309_030--Hb_001972_020 Hb_001309_030--Hb_001817_190 Hb_001309_030--Hb_010783_010 Hb_004019_100--Hb_001972_020 Hb_004019_100--Hb_001817_190 Hb_004019_100--Hb_010783_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0224738 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0825044

CAGE analysis