Hb_011537_120

Information

Type -
Description -
Location Contig11537: 130019-131369
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04661: 127815-130216
cDNA
(Sanger)
(ID:Location)		 007_I09.ab1: 127871-129905 , 018_G13.ab1: 127815-129737 , 023_H12.ab1: 127869-129546 , 045_E05.ab1: 127825-129852

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011537_120 0.0 - - -
2 Hb_001014_200 0.1885421261 - - -
3 Hb_086287_020 0.2265761237 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
4 Hb_000875_100 0.2525967471 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
5 Hb_033883_050 0.2526121362 - - -
6 Hb_000003_690 0.2561734798 - - -
7 Hb_110486_010 0.2854893836 - - -
8 Hb_121031_010 0.296123386 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
9 Hb_075642_010 0.2964391152 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
10 Hb_179447_010 0.297082002 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
11 Hb_003702_050 0.2974315572 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
12 Hb_034050_010 0.3041519564 - - PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo]
13 Hb_174005_010 0.304869709 - - hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
14 Hb_001377_440 0.3115747728 - - -
15 Hb_053582_010 0.3150276341 - - -
16 Hb_002352_040 0.3156641918 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
17 Hb_130775_010 0.316250561 - - conserved hypothetical protein [Ricinus communis]
18 Hb_056531_040 0.3207831483 - - PREDICTED: uncharacterized protein LOC103494239 [Cucumis melo]
19 Hb_006692_050 0.321975841 - - Chloroplastic lipocalin [Theobroma cacao]
20 Hb_007761_010 0.3254123267 - - -

Gene co-expression network

sample Hb_011537_120 Hb_011537_120 Hb_001014_200 Hb_001014_200 Hb_011537_120--Hb_001014_200 Hb_086287_020 Hb_086287_020 Hb_011537_120--Hb_086287_020 Hb_000875_100 Hb_000875_100 Hb_011537_120--Hb_000875_100 Hb_033883_050 Hb_033883_050 Hb_011537_120--Hb_033883_050 Hb_000003_690 Hb_000003_690 Hb_011537_120--Hb_000003_690 Hb_110486_010 Hb_110486_010 Hb_011537_120--Hb_110486_010 Hb_001014_200--Hb_000875_100 Hb_121031_010 Hb_121031_010 Hb_001014_200--Hb_121031_010 Hb_001014_200--Hb_033883_050 Hb_034050_010 Hb_034050_010 Hb_001014_200--Hb_034050_010 Hb_001014_200--Hb_110486_010 Hb_098842_010 Hb_098842_010 Hb_086287_020--Hb_098842_010 Hb_010997_050 Hb_010997_050 Hb_086287_020--Hb_010997_050 Hb_056531_040 Hb_056531_040 Hb_086287_020--Hb_056531_040 Hb_000059_090 Hb_000059_090 Hb_086287_020--Hb_000059_090 Hb_000004_140 Hb_000004_140 Hb_086287_020--Hb_000004_140 Hb_000875_100--Hb_121031_010 Hb_000875_100--Hb_034050_010 Hb_004162_300 Hb_004162_300 Hb_000875_100--Hb_004162_300 Hb_027014_010 Hb_027014_010 Hb_000875_100--Hb_027014_010 Hb_163115_010 Hb_163115_010 Hb_000875_100--Hb_163115_010 Hb_033883_050--Hb_110486_010 Hb_174005_010 Hb_174005_010 Hb_033883_050--Hb_174005_010 Hb_000906_050 Hb_000906_050 Hb_033883_050--Hb_000906_050 Hb_053582_010 Hb_053582_010 Hb_033883_050--Hb_053582_010 Hb_075642_010 Hb_075642_010 Hb_000003_690--Hb_075642_010 Hb_003702_050 Hb_003702_050 Hb_000003_690--Hb_003702_050 Hb_002365_010 Hb_002365_010 Hb_000003_690--Hb_002365_010 Hb_169488_010 Hb_169488_010 Hb_000003_690--Hb_169488_010 Hb_126398_010 Hb_126398_010 Hb_000003_690--Hb_126398_010 Hb_001981_080 Hb_001981_080 Hb_000003_690--Hb_001981_080 Hb_046707_010 Hb_046707_010 Hb_110486_010--Hb_046707_010 Hb_037271_010 Hb_037271_010 Hb_110486_010--Hb_037271_010 Hb_110486_010--Hb_000875_100 Hb_110486_010--Hb_121031_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 1.33276 14.949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.85536 0 0 0 0

CAGE analysis