Hb_011540_030

Information

Type transcription factor
Description TF Family: SET
Location Contig11540: 21537-22831
Sequence    

Annotation

kegg
ID rcu:RCOM_1579260
description trithorax, putative (EC:2.1.1.43)
nr
ID XP_006604067.1
description PREDICTED: histone-lysine N-methyltransferase ATX5-like isoform X6 [Glycine max]
swissprot
ID Q8GZ42
description Histone-lysine N-methyltransferase ATX5 OS=Arabidopsis thaliana GN=ATX5 PE=2 SV=1
trembl
ID A0A0B2SHA3
description Histone-lysine N-methyltransferase OS=Glycine soja GN=glysoja_024433 PE=4 SV=1
Gene Ontology
ID GO:0005515
description histone-lysine n-methyltransferase atx5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011540_030 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX5-like isoform X6 [Glycine max]
2 Hb_002609_250 0.2476703164 - - PREDICTED: starch-binding domain-containing protein 1-like [Jatropha curcas]
3 Hb_001247_190 0.2717147512 - - unnamed protein product [Vitis vinifera]
4 Hb_011081_040 0.2774983636 - - hypothetical protein JCGZ_20956 [Jatropha curcas]
5 Hb_011512_050 0.2972593123 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
6 Hb_000240_120 0.3018802078 - - ras-related protein Rab-5B [Reticulomyxa filosa]
7 Hb_000028_260 0.3174951769 - - hypothetical protein glysoja_041948 [Glycine soja]
8 Hb_025075_010 0.3176369751 - - 50S ribosomal protein L24 [Glycine soja]
9 Hb_012753_030 0.3187846692 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
10 Hb_000240_100 0.3196000869 - - PREDICTED: ras-related protein Rab5-like [Eucalyptus grandis]
11 Hb_001247_030 0.3253407718 - - -
12 Hb_000350_040 0.3301140595 - - -
13 Hb_014720_090 0.3303030535 - - -
14 Hb_001268_090 0.3308045302 - - Uncharacterized protein TCM_020504 [Theobroma cacao]
15 Hb_001235_050 0.3335652542 - - PREDICTED: proteasome activator subunit 4 [Nelumbo nucifera]
16 Hb_000483_400 0.3408466976 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
17 Hb_099298_010 0.3422961706 - - -
18 Hb_089202_010 0.3432322967 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
19 Hb_011037_020 0.3442483739 - - unknown [Picea sitchensis]
20 Hb_006162_060 0.344409034 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]

Gene co-expression network

sample Hb_011540_030 Hb_011540_030 Hb_002609_250 Hb_002609_250 Hb_011540_030--Hb_002609_250 Hb_001247_190 Hb_001247_190 Hb_011540_030--Hb_001247_190 Hb_011081_040 Hb_011081_040 Hb_011540_030--Hb_011081_040 Hb_011512_050 Hb_011512_050 Hb_011540_030--Hb_011512_050 Hb_000240_120 Hb_000240_120 Hb_011540_030--Hb_000240_120 Hb_000028_260 Hb_000028_260 Hb_011540_030--Hb_000028_260 Hb_002609_250--Hb_000028_260 Hb_001247_030 Hb_001247_030 Hb_002609_250--Hb_001247_030 Hb_000345_070 Hb_000345_070 Hb_002609_250--Hb_000345_070 Hb_000532_090 Hb_000532_090 Hb_002609_250--Hb_000532_090 Hb_011316_140 Hb_011316_140 Hb_002609_250--Hb_011316_140 Hb_000661_060 Hb_000661_060 Hb_001247_190--Hb_000661_060 Hb_001767_130 Hb_001767_130 Hb_001247_190--Hb_001767_130 Hb_000427_070 Hb_000427_070 Hb_001247_190--Hb_000427_070 Hb_003464_070 Hb_003464_070 Hb_001247_190--Hb_003464_070 Hb_001247_190--Hb_000240_120 Hb_001141_290 Hb_001141_290 Hb_011081_040--Hb_001141_290 Hb_094890_010 Hb_094890_010 Hb_011081_040--Hb_094890_010 Hb_134708_010 Hb_134708_010 Hb_011081_040--Hb_134708_010 Hb_011081_040--Hb_000427_070 Hb_067793_010 Hb_067793_010 Hb_011081_040--Hb_067793_010 Hb_002078_260 Hb_002078_260 Hb_011512_050--Hb_002078_260 Hb_001163_040 Hb_001163_040 Hb_011512_050--Hb_001163_040 Hb_011512_050--Hb_000240_120 Hb_000240_100 Hb_000240_100 Hb_011512_050--Hb_000240_100 Hb_132180_010 Hb_132180_010 Hb_011512_050--Hb_132180_010 Hb_011214_100 Hb_011214_100 Hb_011512_050--Hb_011214_100 Hb_175933_010 Hb_175933_010 Hb_000240_120--Hb_175933_010 Hb_000240_120--Hb_001163_040 Hb_000240_120--Hb_132180_010 Hb_001233_020 Hb_001233_020 Hb_000240_120--Hb_001233_020 Hb_001208_030 Hb_001208_030 Hb_000240_120--Hb_001208_030 Hb_000028_260--Hb_001247_030 Hb_004125_070 Hb_004125_070 Hb_000028_260--Hb_004125_070 Hb_000649_340 Hb_000649_340 Hb_000028_260--Hb_000649_340 Hb_000483_400 Hb_000483_400 Hb_000028_260--Hb_000483_400 Hb_000157_050 Hb_000157_050 Hb_000028_260--Hb_000157_050 Hb_000796_020 Hb_000796_020 Hb_000028_260--Hb_000796_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0611624 0.653178 0 0.177812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.271209 0.221935 0.0573503 0

CAGE analysis