Hb_011571_010

Information

Type -
Description -
Location Contig11571: 3732-8140
Sequence    

Annotation

kegg
ID rcu:RCOM_1562020
description Metal tolerance protein C4, putative
nr
ID XP_002514373.1
description Metal tolerance protein C4, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RKV4
description Metal tolerance protein C4, putative OS=Ricinus communis GN=RCOM_1562020 PE=4 SV=1
Gene Ontology
ID GO:0016021
description metal tolerance protein c4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04733: 3659-42249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011571_010 0.0 - - Metal tolerance protein C4, putative [Ricinus communis]
2 Hb_007317_210 0.0561854134 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
3 Hb_112798_030 0.0691069998 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000107_620 0.0737917676 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
5 Hb_006332_020 0.0770039666 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
6 Hb_001811_050 0.078818652 - - PREDICTED: protein EXECUTER 1, chloroplastic [Jatropha curcas]
7 Hb_006541_030 0.0795497711 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
8 Hb_009838_080 0.0797253277 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
9 Hb_017904_010 0.0799525802 - - PREDICTED: DNA repair protein recA homolog 2, mitochondrial [Jatropha curcas]
10 Hb_007951_050 0.0802285849 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002496_030 0.0828706925 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
12 Hb_002214_040 0.0840546095 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
13 Hb_003032_040 0.0845034288 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
14 Hb_002044_080 0.0854877225 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
15 Hb_000926_280 0.0870544607 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
16 Hb_000221_220 0.087343512 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
17 Hb_000395_170 0.0875858395 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
18 Hb_004109_090 0.0883333281 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_000019_210 0.0886499661 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase MAK3 [Jatropha curcas]
20 Hb_002253_070 0.0890731342 transcription factor TF Family: NAC NAC transcription factor 042 [Jatropha curcas]

Gene co-expression network

sample Hb_011571_010 Hb_011571_010 Hb_007317_210 Hb_007317_210 Hb_011571_010--Hb_007317_210 Hb_112798_030 Hb_112798_030 Hb_011571_010--Hb_112798_030 Hb_000107_620 Hb_000107_620 Hb_011571_010--Hb_000107_620 Hb_006332_020 Hb_006332_020 Hb_011571_010--Hb_006332_020 Hb_001811_050 Hb_001811_050 Hb_011571_010--Hb_001811_050 Hb_006541_030 Hb_006541_030 Hb_011571_010--Hb_006541_030 Hb_002496_030 Hb_002496_030 Hb_007317_210--Hb_002496_030 Hb_007951_050 Hb_007951_050 Hb_007317_210--Hb_007951_050 Hb_004109_090 Hb_004109_090 Hb_007317_210--Hb_004109_090 Hb_000395_170 Hb_000395_170 Hb_007317_210--Hb_000395_170 Hb_000170_210 Hb_000170_210 Hb_007317_210--Hb_000170_210 Hb_153112_020 Hb_153112_020 Hb_112798_030--Hb_153112_020 Hb_000331_080 Hb_000331_080 Hb_112798_030--Hb_000331_080 Hb_004931_090 Hb_004931_090 Hb_112798_030--Hb_004931_090 Hb_008878_030 Hb_008878_030 Hb_112798_030--Hb_008878_030 Hb_011224_110 Hb_011224_110 Hb_112798_030--Hb_011224_110 Hb_009838_080 Hb_009838_080 Hb_000107_620--Hb_009838_080 Hb_002205_070 Hb_002205_070 Hb_000107_620--Hb_002205_070 Hb_118707_030 Hb_118707_030 Hb_000107_620--Hb_118707_030 Hb_006400_030 Hb_006400_030 Hb_000107_620--Hb_006400_030 Hb_002942_190 Hb_002942_190 Hb_000107_620--Hb_002942_190 Hb_000398_180 Hb_000398_180 Hb_006332_020--Hb_000398_180 Hb_004195_160 Hb_004195_160 Hb_006332_020--Hb_004195_160 Hb_028872_140 Hb_028872_140 Hb_006332_020--Hb_028872_140 Hb_001571_040 Hb_001571_040 Hb_006332_020--Hb_001571_040 Hb_001226_160 Hb_001226_160 Hb_006332_020--Hb_001226_160 Hb_002876_110 Hb_002876_110 Hb_006332_020--Hb_002876_110 Hb_000019_210 Hb_000019_210 Hb_001811_050--Hb_000019_210 Hb_000832_140 Hb_000832_140 Hb_001811_050--Hb_000832_140 Hb_002214_040 Hb_002214_040 Hb_001811_050--Hb_002214_040 Hb_002043_190 Hb_002043_190 Hb_001811_050--Hb_002043_190 Hb_002449_020 Hb_002449_020 Hb_001811_050--Hb_002449_020 Hb_007380_070 Hb_007380_070 Hb_006541_030--Hb_007380_070 Hb_005539_350 Hb_005539_350 Hb_006541_030--Hb_005539_350 Hb_000243_030 Hb_000243_030 Hb_006541_030--Hb_000243_030 Hb_006541_030--Hb_000398_180 Hb_000529_190 Hb_000529_190 Hb_006541_030--Hb_000529_190 Hb_002874_190 Hb_002874_190 Hb_006541_030--Hb_002874_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.4757 10.4161 15.1941 8.7586 28.4813 32.8727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.4132 38.8205 39.3783 17.2329 13.7001

CAGE analysis