Hb_011571_020

Information

Type -
Description -
Location Contig11571: 29683-42326
Sequence    

Annotation

kegg
ID pop:POPTR_0010s25780g
description POPTRDRAFT_228460; hypothetical protein
nr
ID XP_012087710.1
description PREDICTED: metal tolerance protein C4 [Jatropha curcas]
swissprot
ID Q8H1G3
description Metal tolerance protein C4 OS=Arabidopsis thaliana GN=MTPC4 PE=2 SV=1
trembl
ID A0A067JYT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26505 PE=4 SV=1
Gene Ontology
ID GO:0016021
description metal tolerance protein c4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04733: 3659-42249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011571_020 0.0 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
2 Hb_011360_140 0.0563964288 - - 40S ribosomal protein S19, putative [Ricinus communis]
3 Hb_003001_140 0.0564558036 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
4 Hb_005993_040 0.0608122674 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
5 Hb_001301_160 0.0625615466 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
6 Hb_005332_070 0.0659642435 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
7 Hb_000473_040 0.0722446495 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
8 Hb_000392_440 0.0750614121 - - PREDICTED: nuclear ribonuclease Z isoform X1 [Jatropha curcas]
9 Hb_000661_250 0.0761105417 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
10 Hb_000221_220 0.0762151266 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
11 Hb_001226_160 0.0767983954 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
12 Hb_000089_220 0.0769651896 - - PREDICTED: protein FAM133-like [Populus euphratica]
13 Hb_002007_060 0.077156171 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
14 Hb_000056_200 0.078501836 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
15 Hb_012762_050 0.0796230561 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
16 Hb_135545_010 0.0805968594 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_000015_080 0.0807513035 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
18 Hb_001828_090 0.0807629882 - - prohibitin, putative [Ricinus communis]
19 Hb_011689_080 0.0821011177 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
20 Hb_001511_020 0.0822500356 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]

Gene co-expression network

sample Hb_011571_020 Hb_011571_020 Hb_011360_140 Hb_011360_140 Hb_011571_020--Hb_011360_140 Hb_003001_140 Hb_003001_140 Hb_011571_020--Hb_003001_140 Hb_005993_040 Hb_005993_040 Hb_011571_020--Hb_005993_040 Hb_001301_160 Hb_001301_160 Hb_011571_020--Hb_001301_160 Hb_005332_070 Hb_005332_070 Hb_011571_020--Hb_005332_070 Hb_000473_040 Hb_000473_040 Hb_011571_020--Hb_000473_040 Hb_011360_140--Hb_000473_040 Hb_000933_180 Hb_000933_180 Hb_011360_140--Hb_000933_180 Hb_000392_440 Hb_000392_440 Hb_011360_140--Hb_000392_440 Hb_001828_090 Hb_001828_090 Hb_011360_140--Hb_001828_090 Hb_011360_140--Hb_005993_040 Hb_000089_220 Hb_000089_220 Hb_003001_140--Hb_000089_220 Hb_003001_140--Hb_001301_160 Hb_006185_050 Hb_006185_050 Hb_003001_140--Hb_006185_050 Hb_000056_200 Hb_000056_200 Hb_003001_140--Hb_000056_200 Hb_000398_180 Hb_000398_180 Hb_003001_140--Hb_000398_180 Hb_002043_190 Hb_002043_190 Hb_005993_040--Hb_002043_190 Hb_002928_130 Hb_002928_130 Hb_005993_040--Hb_002928_130 Hb_005993_040--Hb_000392_440 Hb_003126_080 Hb_003126_080 Hb_005993_040--Hb_003126_080 Hb_096563_010 Hb_096563_010 Hb_001301_160--Hb_096563_010 Hb_002007_060 Hb_002007_060 Hb_001301_160--Hb_002007_060 Hb_001511_020 Hb_001511_020 Hb_001301_160--Hb_001511_020 Hb_000661_250 Hb_000661_250 Hb_001301_160--Hb_000661_250 Hb_000230_200 Hb_000230_200 Hb_001301_160--Hb_000230_200 Hb_005332_070--Hb_000473_040 Hb_005332_070--Hb_000089_220 Hb_005332_070--Hb_011360_140 Hb_012762_050 Hb_012762_050 Hb_005332_070--Hb_012762_050 Hb_005332_070--Hb_003001_140 Hb_000473_040--Hb_012762_050 Hb_135545_010 Hb_135545_010 Hb_000473_040--Hb_135545_010 Hb_000473_040--Hb_002007_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.181 11.8082 12.1488 5.53685 19.6645 25.2631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.5482 29.7511 19.916 9.80393 5.37733

CAGE analysis