Hb_011606_020

Information

Type -
Description -
Location Contig11606: 41443-44955
Sequence    

Annotation

kegg
ID pop:POPTR_0014s15330g
description POPTRDRAFT_732264; dienelactone hydrolase family protein
nr
ID KDO54718.1
description hypothetical protein CISIN_1g023687mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067EI41
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023687mg PE=4 SV=1
Gene Ontology
ID GO:0005829
description carboxymethylenebutenolidase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011606_020 0.0 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
2 Hb_000116_130 0.0885162541 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
3 Hb_000107_430 0.0956962769 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
4 Hb_001226_140 0.0975013437 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
5 Hb_001080_300 0.0994503228 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
6 Hb_002110_100 0.1014289366 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
7 Hb_011139_040 0.1016369277 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X2 [Jatropha curcas]
8 Hb_000638_070 0.1019794978 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
9 Hb_001946_380 0.1022261726 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
10 Hb_003875_030 0.1036138427 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
11 Hb_000243_350 0.1037782803 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Tarenaya hassleriana]
12 Hb_012573_050 0.1049252049 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
13 Hb_074197_040 0.1084645671 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
14 Hb_000645_280 0.1085201669 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
15 Hb_043792_040 0.1085228792 - - hypothetical protein, partial [Rosa rugosa]
16 Hb_003453_050 0.1094779534 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
17 Hb_001663_040 0.1096465571 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
18 Hb_000240_030 0.111227565 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003305_040 0.1126813235 - - AP47/50p mRNA family protein [Populus trichocarpa]
20 Hb_001029_040 0.113791233 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]

Gene co-expression network

sample Hb_011606_020 Hb_011606_020 Hb_000116_130 Hb_000116_130 Hb_011606_020--Hb_000116_130 Hb_000107_430 Hb_000107_430 Hb_011606_020--Hb_000107_430 Hb_001226_140 Hb_001226_140 Hb_011606_020--Hb_001226_140 Hb_001080_300 Hb_001080_300 Hb_011606_020--Hb_001080_300 Hb_002110_100 Hb_002110_100 Hb_011606_020--Hb_002110_100 Hb_011139_040 Hb_011139_040 Hb_011606_020--Hb_011139_040 Hb_012573_050 Hb_012573_050 Hb_000116_130--Hb_012573_050 Hb_170138_010 Hb_170138_010 Hb_000116_130--Hb_170138_010 Hb_000077_150 Hb_000077_150 Hb_000116_130--Hb_000077_150 Hb_000116_130--Hb_000107_430 Hb_001663_040 Hb_001663_040 Hb_000116_130--Hb_001663_040 Hb_002762_110 Hb_002762_110 Hb_000107_430--Hb_002762_110 Hb_003053_110 Hb_003053_110 Hb_000107_430--Hb_003053_110 Hb_007741_110 Hb_007741_110 Hb_000107_430--Hb_007741_110 Hb_007192_030 Hb_007192_030 Hb_000107_430--Hb_007192_030 Hb_000167_110 Hb_000167_110 Hb_000107_430--Hb_000167_110 Hb_004644_030 Hb_004644_030 Hb_000107_430--Hb_004644_030 Hb_032202_040 Hb_032202_040 Hb_001226_140--Hb_032202_040 Hb_022092_030 Hb_022092_030 Hb_001226_140--Hb_022092_030 Hb_008421_020 Hb_008421_020 Hb_001226_140--Hb_008421_020 Hb_000504_180 Hb_000504_180 Hb_001226_140--Hb_000504_180 Hb_001818_100 Hb_001818_100 Hb_001226_140--Hb_001818_100 Hb_158530_020 Hb_158530_020 Hb_001226_140--Hb_158530_020 Hb_004957_030 Hb_004957_030 Hb_001080_300--Hb_004957_030 Hb_000185_220 Hb_000185_220 Hb_001080_300--Hb_000185_220 Hb_001627_040 Hb_001627_040 Hb_001080_300--Hb_001627_040 Hb_000417_390 Hb_000417_390 Hb_001080_300--Hb_000417_390 Hb_001029_040 Hb_001029_040 Hb_001080_300--Hb_001029_040 Hb_001975_150 Hb_001975_150 Hb_001080_300--Hb_001975_150 Hb_032920_070 Hb_032920_070 Hb_002110_100--Hb_032920_070 Hb_003305_040 Hb_003305_040 Hb_002110_100--Hb_003305_040 Hb_002392_010 Hb_002392_010 Hb_002110_100--Hb_002392_010 Hb_004158_020 Hb_004158_020 Hb_002110_100--Hb_004158_020 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070 Hb_005701_120 Hb_005701_120 Hb_002110_100--Hb_005701_120 Hb_043792_040 Hb_043792_040 Hb_011139_040--Hb_043792_040 Hb_000027_260 Hb_000027_260 Hb_011139_040--Hb_000027_260 Hb_000243_350 Hb_000243_350 Hb_011139_040--Hb_000243_350 Hb_074197_040 Hb_074197_040 Hb_011139_040--Hb_074197_040 Hb_001014_070 Hb_001014_070 Hb_011139_040--Hb_001014_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1562 16.8523 29.0073 58.4223 14.2057 12.0843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.373 23.181 34.5437 18.7106 56.3888

CAGE analysis