Hb_011609_020

Information

Type -
Description -
Location Contig11609: 11082-14302
Sequence    

Annotation

kegg
ID rcu:RCOM_1570640
description hypothetical protein
nr
ID XP_002521222.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5F3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1570640 PE=4 SV=1
Gene Ontology
ID GO:0044434
description abscisic acid-deficient 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04942: 11120-14330 , PASA_asmbl_04943: 13381-13606 , PASA_asmbl_04944: 11903-12396 , PASA_asmbl_04945: 11909-12449
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011609_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000189_240 0.0876284882 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
3 Hb_010175_040 0.0882445188 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
4 Hb_003362_030 0.0904549344 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
5 Hb_006831_120 0.0933918869 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
6 Hb_004052_050 0.0936143353 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]
7 Hb_000302_140 0.0938412505 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
8 Hb_000258_250 0.0948980373 - - Origin recognition complex subunit, putative [Ricinus communis]
9 Hb_000571_020 0.0952703194 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
10 Hb_000261_140 0.0970209168 - - -
11 Hb_010560_030 0.0975867988 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
12 Hb_000356_090 0.0976483081 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
13 Hb_000115_220 0.0983015852 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
14 Hb_000826_100 0.0995191324 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
15 Hb_009486_020 0.0996837139 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
16 Hb_001329_150 0.1017857771 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
17 Hb_021596_090 0.1027504493 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]
18 Hb_152784_010 0.1044137649 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
19 Hb_026889_030 0.1044849572 - - protein with unknown function [Ricinus communis]
20 Hb_143496_010 0.1045036378 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]

Gene co-expression network

sample Hb_011609_020 Hb_011609_020 Hb_000189_240 Hb_000189_240 Hb_011609_020--Hb_000189_240 Hb_010175_040 Hb_010175_040 Hb_011609_020--Hb_010175_040 Hb_003362_030 Hb_003362_030 Hb_011609_020--Hb_003362_030 Hb_006831_120 Hb_006831_120 Hb_011609_020--Hb_006831_120 Hb_004052_050 Hb_004052_050 Hb_011609_020--Hb_004052_050 Hb_000302_140 Hb_000302_140 Hb_011609_020--Hb_000302_140 Hb_000826_100 Hb_000826_100 Hb_000189_240--Hb_000826_100 Hb_026053_020 Hb_026053_020 Hb_000189_240--Hb_026053_020 Hb_002000_140 Hb_002000_140 Hb_000189_240--Hb_002000_140 Hb_003605_160 Hb_003605_160 Hb_000189_240--Hb_003605_160 Hb_002303_060 Hb_002303_060 Hb_000189_240--Hb_002303_060 Hb_008071_020 Hb_008071_020 Hb_000189_240--Hb_008071_020 Hb_000261_140 Hb_000261_140 Hb_010175_040--Hb_000261_140 Hb_000920_110 Hb_000920_110 Hb_010175_040--Hb_000920_110 Hb_143496_010 Hb_143496_010 Hb_010175_040--Hb_143496_010 Hb_000417_360 Hb_000417_360 Hb_010175_040--Hb_000417_360 Hb_001141_140 Hb_001141_140 Hb_010175_040--Hb_001141_140 Hb_001616_040 Hb_001616_040 Hb_010175_040--Hb_001616_040 Hb_000457_180 Hb_000457_180 Hb_003362_030--Hb_000457_180 Hb_001341_150 Hb_001341_150 Hb_003362_030--Hb_001341_150 Hb_148121_040 Hb_148121_040 Hb_003362_030--Hb_148121_040 Hb_003362_030--Hb_008071_020 Hb_021068_040 Hb_021068_040 Hb_003362_030--Hb_021068_040 Hb_001776_160 Hb_001776_160 Hb_006831_120--Hb_001776_160 Hb_000103_320 Hb_000103_320 Hb_006831_120--Hb_000103_320 Hb_000638_250 Hb_000638_250 Hb_006831_120--Hb_000638_250 Hb_000340_570 Hb_000340_570 Hb_006831_120--Hb_000340_570 Hb_028872_080 Hb_028872_080 Hb_006831_120--Hb_028872_080 Hb_000140_050 Hb_000140_050 Hb_006831_120--Hb_000140_050 Hb_009486_020 Hb_009486_020 Hb_004052_050--Hb_009486_020 Hb_018124_010 Hb_018124_010 Hb_004052_050--Hb_018124_010 Hb_000805_240 Hb_000805_240 Hb_004052_050--Hb_000805_240 Hb_001247_100 Hb_001247_100 Hb_004052_050--Hb_001247_100 Hb_152784_010 Hb_152784_010 Hb_004052_050--Hb_152784_010 Hb_007192_100 Hb_007192_100 Hb_004052_050--Hb_007192_100 Hb_000571_020 Hb_000571_020 Hb_000302_140--Hb_000571_020 Hb_000538_120 Hb_000538_120 Hb_000302_140--Hb_000538_120 Hb_000302_140--Hb_001341_150 Hb_000085_350 Hb_000085_350 Hb_000302_140--Hb_000085_350 Hb_000413_280 Hb_000413_280 Hb_000302_140--Hb_000413_280 Hb_028396_010 Hb_028396_010 Hb_000302_140--Hb_028396_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.93968 5.81047 16.3809 17.3056 9.04082 5.45077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.6381 33.2419 22.4751 8.66621 6.36734

CAGE analysis