Hb_011609_030

Information

Type -
Description -
Location Contig11609: 17420-19745
Sequence    

Annotation

kegg
ID rcu:RCOM_1571370
description hypothetical protein
nr
ID ADK13070.1
description conserved hypothetical protein 13 [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID D9J001
description Putative uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04946: 17416-19831 , PASA_asmbl_04947: 18049-19831
cDNA
(Sanger)
(ID:Location)		 003_O01.ab1: 17416-19587 , 018_H20.ab1: 17416-19517 , 027_N13.ab1: 17420-19560

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011609_030 0.0 - - conserved hypothetical protein 13 [Hevea brasiliensis]
2 Hb_000714_020 0.0502691776 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
3 Hb_004232_010 0.0814991531 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
4 Hb_001623_370 0.0840589035 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005741_020 0.0911070537 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
6 Hb_011930_010 0.0939231167 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
7 Hb_001956_120 0.0987229529 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001341_030 0.0993056049 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
9 Hb_005754_020 0.1016873281 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
10 Hb_001493_100 0.1034245891 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
11 Hb_005147_110 0.1050004487 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
12 Hb_001956_050 0.1065926767 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
13 Hb_002660_140 0.1093068529 - - hypothetical protein POPTR_0006s13060g [Populus trichocarpa]
14 Hb_000028_470 0.1098908428 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
15 Hb_002619_010 0.1101117406 - - -
16 Hb_001663_110 0.1103802119 - - RNA binding protein, putative [Ricinus communis]
17 Hb_005333_020 0.1104929655 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
18 Hb_002044_090 0.110580424 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
19 Hb_004070_030 0.1115261445 - - PREDICTED: phosphatidate cytidylyltransferase, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_000373_270 0.1117399194 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011609_030 Hb_011609_030 Hb_000714_020 Hb_000714_020 Hb_011609_030--Hb_000714_020 Hb_004232_010 Hb_004232_010 Hb_011609_030--Hb_004232_010 Hb_001623_370 Hb_001623_370 Hb_011609_030--Hb_001623_370 Hb_005741_020 Hb_005741_020 Hb_011609_030--Hb_005741_020 Hb_011930_010 Hb_011930_010 Hb_011609_030--Hb_011930_010 Hb_001956_120 Hb_001956_120 Hb_011609_030--Hb_001956_120 Hb_000714_020--Hb_001623_370 Hb_001493_100 Hb_001493_100 Hb_000714_020--Hb_001493_100 Hb_001514_020 Hb_001514_020 Hb_000714_020--Hb_001514_020 Hb_002619_010 Hb_002619_010 Hb_000714_020--Hb_002619_010 Hb_004374_010 Hb_004374_010 Hb_000714_020--Hb_004374_010 Hb_000500_290 Hb_000500_290 Hb_004232_010--Hb_000500_290 Hb_004232_010--Hb_005741_020 Hb_004232_010--Hb_000714_020 Hb_004070_030 Hb_004070_030 Hb_004232_010--Hb_004070_030 Hb_000282_150 Hb_000282_150 Hb_004232_010--Hb_000282_150 Hb_001623_370--Hb_001514_020 Hb_004502_030 Hb_004502_030 Hb_001623_370--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_001623_370--Hb_007992_030 Hb_001663_110 Hb_001663_110 Hb_001623_370--Hb_001663_110 Hb_005271_070 Hb_005271_070 Hb_005741_020--Hb_005271_070 Hb_005741_020--Hb_001623_370 Hb_005741_020--Hb_000714_020 Hb_005741_020--Hb_001956_120 Hb_005147_110 Hb_005147_110 Hb_011930_010--Hb_005147_110 Hb_024399_010 Hb_024399_010 Hb_011930_010--Hb_024399_010 Hb_160818_010 Hb_160818_010 Hb_011930_010--Hb_160818_010 Hb_011930_010--Hb_000714_020 Hb_005333_020 Hb_005333_020 Hb_011930_010--Hb_005333_020 Hb_001956_120--Hb_004374_010 Hb_000347_080 Hb_000347_080 Hb_001956_120--Hb_000347_080 Hb_000976_270 Hb_000976_270 Hb_001956_120--Hb_000976_270 Hb_011537_040 Hb_011537_040 Hb_001956_120--Hb_011537_040 Hb_000062_230 Hb_000062_230 Hb_001956_120--Hb_000062_230 Hb_001956_120--Hb_001663_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1102.4 238.737 126.958 117.652 541.771 824.496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
564.831 370.427 253.49 107.598 28.7683

CAGE analysis