Hb_011609_050

Information

Type -
Description -
Location Contig11609: 39678-47764
Sequence    

Annotation

kegg
ID cic:CICLE_v10011187mg
description hypothetical protein
nr
ID XP_012077972.1
description PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
swissprot
ID P58223
description KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1
trembl
ID A0A067KD45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12979 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at4g18375-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04949: 41382-41482 , PASA_asmbl_04950: 41483-44630 , PASA_asmbl_04951: 45598-45700 , PASA_asmbl_04952: 47075-47595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011609_050 0.0 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
2 Hb_002351_020 0.0969304454 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
3 Hb_003849_250 0.0983306741 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
4 Hb_003142_070 0.0991807379 - - hypothetical protein F383_14657 [Gossypium arboreum]
5 Hb_000334_270 0.0991976543 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
6 Hb_022256_060 0.1003579428 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
7 Hb_021422_010 0.1008827806 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
8 Hb_001408_100 0.1013635053 - - pseudouridylate synthase, putative [Ricinus communis]
9 Hb_000032_490 0.101965615 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
10 Hb_004976_020 0.1032906081 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
11 Hb_002157_260 0.1034747086 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
12 Hb_003029_030 0.1069325388 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
13 Hb_000649_070 0.1079343489 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
14 Hb_007943_120 0.1091883076 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
15 Hb_000487_420 0.1096674216 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
16 Hb_000368_020 0.1111971904 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
17 Hb_003849_060 0.1117636159 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
18 Hb_002374_280 0.1119844531 - - -
19 Hb_002301_270 0.1121249963 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
20 Hb_002045_150 0.1130623168 - - histone acetyltransferase gcn5, putative [Ricinus communis]

Gene co-expression network

sample Hb_011609_050 Hb_011609_050 Hb_002351_020 Hb_002351_020 Hb_011609_050--Hb_002351_020 Hb_003849_250 Hb_003849_250 Hb_011609_050--Hb_003849_250 Hb_003142_070 Hb_003142_070 Hb_011609_050--Hb_003142_070 Hb_000334_270 Hb_000334_270 Hb_011609_050--Hb_000334_270 Hb_022256_060 Hb_022256_060 Hb_011609_050--Hb_022256_060 Hb_021422_010 Hb_021422_010 Hb_011609_050--Hb_021422_010 Hb_000032_490 Hb_000032_490 Hb_002351_020--Hb_000032_490 Hb_003029_030 Hb_003029_030 Hb_002351_020--Hb_003029_030 Hb_000832_090 Hb_000832_090 Hb_002351_020--Hb_000832_090 Hb_005489_080 Hb_005489_080 Hb_002351_020--Hb_005489_080 Hb_002686_250 Hb_002686_250 Hb_002351_020--Hb_002686_250 Hb_001408_100 Hb_001408_100 Hb_002351_020--Hb_001408_100 Hb_008406_110 Hb_008406_110 Hb_003849_250--Hb_008406_110 Hb_000116_180 Hb_000116_180 Hb_003849_250--Hb_000116_180 Hb_003849_250--Hb_000334_270 Hb_000866_470 Hb_000866_470 Hb_003849_250--Hb_000866_470 Hb_000358_250 Hb_000358_250 Hb_003849_250--Hb_000358_250 Hb_001828_160 Hb_001828_160 Hb_003849_250--Hb_001828_160 Hb_000359_330 Hb_000359_330 Hb_003142_070--Hb_000359_330 Hb_006623_020 Hb_006623_020 Hb_003142_070--Hb_006623_020 Hb_003091_010 Hb_003091_010 Hb_003142_070--Hb_003091_010 Hb_000808_250 Hb_000808_250 Hb_003142_070--Hb_000808_250 Hb_001352_090 Hb_001352_090 Hb_003142_070--Hb_001352_090 Hb_000920_280 Hb_000920_280 Hb_003142_070--Hb_000920_280 Hb_000926_190 Hb_000926_190 Hb_000334_270--Hb_000926_190 Hb_010068_040 Hb_010068_040 Hb_000334_270--Hb_010068_040 Hb_003849_060 Hb_003849_060 Hb_000334_270--Hb_003849_060 Hb_033153_070 Hb_033153_070 Hb_000334_270--Hb_033153_070 Hb_006355_010 Hb_006355_010 Hb_000334_270--Hb_006355_010 Hb_002175_030 Hb_002175_030 Hb_000334_270--Hb_002175_030 Hb_008887_020 Hb_008887_020 Hb_022256_060--Hb_008887_020 Hb_000679_340 Hb_000679_340 Hb_022256_060--Hb_000679_340 Hb_008695_110 Hb_008695_110 Hb_022256_060--Hb_008695_110 Hb_000230_090 Hb_000230_090 Hb_022256_060--Hb_000230_090 Hb_000160_350 Hb_000160_350 Hb_022256_060--Hb_000160_350 Hb_001821_160 Hb_001821_160 Hb_022256_060--Hb_001821_160 Hb_021422_010--Hb_006623_020 Hb_003018_060 Hb_003018_060 Hb_021422_010--Hb_003018_060 Hb_021422_010--Hb_000032_490 Hb_021422_010--Hb_001828_160 Hb_021422_010--Hb_000808_250 Hb_006960_050 Hb_006960_050 Hb_021422_010--Hb_006960_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7665 10.1511 10.501 2.66528 19.305 11.3623
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.06398 7.73651 3.43772 4.74356 6.76482

CAGE analysis