Hb_011609_080

Information

Type -
Description -
Location Contig11609: 84831-90378
Sequence    

Annotation

kegg
ID rcu:RCOM_1725680
description uv excision repair protein rad23, putative
nr
ID XP_002516727.1
description uv excision repair protein rad23, putative [Ricinus communis]
swissprot
ID Q84L31
description Ubiquitin receptor RAD23c OS=Arabidopsis thaliana GN=RAD23C PE=1 SV=2
trembl
ID B9RSK8
description Uv excision repair protein rad23, putative OS=Ricinus communis GN=RCOM_1725680 PE=4 SV=1
Gene Ontology
ID GO:0005634
description uv excision repair protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04954: 84713-90344 , PASA_asmbl_04955: 87613-87734
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011609_080 0.0 - - uv excision repair protein rad23, putative [Ricinus communis]
2 Hb_007632_020 0.0657432968 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
3 Hb_001486_340 0.0750453241 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
4 Hb_006355_010 0.0758892287 - - PREDICTED: protein NLRC3 [Jatropha curcas]
5 Hb_000390_180 0.0767231227 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
6 Hb_000498_010 0.0806793067 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_016461_010 0.0816826303 - - PREDICTED: proline synthase co-transcribed bacterial homolog protein [Jatropha curcas]
8 Hb_007336_020 0.0843297565 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
9 Hb_007632_110 0.0844562653 - - chromatin regulatory protein sir2, putative [Ricinus communis]
10 Hb_000853_230 0.086984636 - - syntaxin, putative [Ricinus communis]
11 Hb_000617_240 0.0871294574 - - PREDICTED: uncharacterized protein LOC105647502 [Jatropha curcas]
12 Hb_001357_380 0.0880575808 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_007520_030 0.0894966411 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
14 Hb_000794_050 0.0897040949 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
15 Hb_000189_330 0.0900594914 - - PREDICTED: ER membrane protein complex subunit 2 [Jatropha curcas]
16 Hb_011942_080 0.0903837875 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
17 Hb_008253_010 0.0907084696 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
18 Hb_007590_080 0.0907821165 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
19 Hb_001390_110 0.0914946024 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
20 Hb_001621_170 0.0919260993 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011609_080 Hb_011609_080 Hb_007632_020 Hb_007632_020 Hb_011609_080--Hb_007632_020 Hb_001486_340 Hb_001486_340 Hb_011609_080--Hb_001486_340 Hb_006355_010 Hb_006355_010 Hb_011609_080--Hb_006355_010 Hb_000390_180 Hb_000390_180 Hb_011609_080--Hb_000390_180 Hb_000498_010 Hb_000498_010 Hb_011609_080--Hb_000498_010 Hb_016461_010 Hb_016461_010 Hb_011609_080--Hb_016461_010 Hb_007590_080 Hb_007590_080 Hb_007632_020--Hb_007590_080 Hb_031042_070 Hb_031042_070 Hb_007632_020--Hb_031042_070 Hb_026099_010 Hb_026099_010 Hb_007632_020--Hb_026099_010 Hb_010931_080 Hb_010931_080 Hb_007632_020--Hb_010931_080 Hb_004370_030 Hb_004370_030 Hb_007632_020--Hb_004370_030 Hb_000538_100 Hb_000538_100 Hb_001486_340--Hb_000538_100 Hb_000179_030 Hb_000179_030 Hb_001486_340--Hb_000179_030 Hb_001486_340--Hb_006355_010 Hb_000308_030 Hb_000308_030 Hb_001486_340--Hb_000308_030 Hb_000174_110 Hb_000174_110 Hb_001486_340--Hb_000174_110 Hb_006620_020 Hb_006620_020 Hb_001486_340--Hb_006620_020 Hb_006355_010--Hb_000179_030 Hb_002175_030 Hb_002175_030 Hb_006355_010--Hb_002175_030 Hb_000334_270 Hb_000334_270 Hb_006355_010--Hb_000334_270 Hb_000771_180 Hb_000771_180 Hb_006355_010--Hb_000771_180 Hb_005337_090 Hb_005337_090 Hb_006355_010--Hb_005337_090 Hb_000390_180--Hb_000498_010 Hb_000853_230 Hb_000853_230 Hb_000390_180--Hb_000853_230 Hb_001390_110 Hb_001390_110 Hb_000390_180--Hb_001390_110 Hb_000390_180--Hb_016461_010 Hb_000390_180--Hb_006620_020 Hb_001936_060 Hb_001936_060 Hb_000390_180--Hb_001936_060 Hb_000879_200 Hb_000879_200 Hb_000498_010--Hb_000879_200 Hb_000618_030 Hb_000618_030 Hb_000498_010--Hb_000618_030 Hb_000498_010--Hb_000853_230 Hb_001926_030 Hb_001926_030 Hb_000498_010--Hb_001926_030 Hb_000794_050 Hb_000794_050 Hb_000498_010--Hb_000794_050 Hb_003020_010 Hb_003020_010 Hb_016461_010--Hb_003020_010 Hb_000617_240 Hb_000617_240 Hb_016461_010--Hb_000617_240 Hb_016461_010--Hb_000498_010 Hb_001621_170 Hb_001621_170 Hb_016461_010--Hb_001621_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.477 46.6867 46.7229 27.0058 66.162 73.4698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.7031 33.9107 30.7493 45.9488 24.3533

CAGE analysis