Hb_011609_090

Information

Type -
Description -
Location Contig11609: 91939-99504
Sequence    

Annotation

kegg
ID rcu:RCOM_1725700
description protein with unknown function
nr
ID XP_002516729.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q54I39
description IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1
trembl
ID B9RSL0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1725700 PE=4 SV=1
Gene Ontology
ID GO:0050896
description regulator of vps4 activity in the mvb pathway

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011609_090 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_004123_020 0.105747915 - - amino acid binding protein, putative [Ricinus communis]
3 Hb_002045_060 0.1340433605 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
4 Hb_015183_060 0.1418282012 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
5 Hb_001171_050 0.1428209207 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
6 Hb_000457_290 0.1455063038 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
7 Hb_001604_150 0.1505931903 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Nelumbo nucifera]
8 Hb_002307_310 0.1507020227 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
9 Hb_005227_040 0.1567646719 transcription factor TF Family: HB unnamed protein product [Vitis vinifera]
10 Hb_004218_020 0.1572730799 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001892_070 0.1584482073 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
12 Hb_001016_100 0.1617976789 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
13 Hb_022318_020 0.1620556823 - - hypothetical protein JCGZ_00541 [Jatropha curcas]
14 Hb_005276_040 0.1624602835 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
15 Hb_001019_100 0.1627132386 - - BnaC02g13240D [Brassica napus]
16 Hb_003360_040 0.16404843 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
17 Hb_004429_020 0.1643769954 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
18 Hb_000035_480 0.1652488423 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
19 Hb_001486_250 0.1655046075 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
20 Hb_006153_040 0.166307806 - - hypothetical protein PRUPE_ppa014788mg [Prunus persica]

Gene co-expression network

sample Hb_011609_090 Hb_011609_090 Hb_004123_020 Hb_004123_020 Hb_011609_090--Hb_004123_020 Hb_002045_060 Hb_002045_060 Hb_011609_090--Hb_002045_060 Hb_015183_060 Hb_015183_060 Hb_011609_090--Hb_015183_060 Hb_001171_050 Hb_001171_050 Hb_011609_090--Hb_001171_050 Hb_000457_290 Hb_000457_290 Hb_011609_090--Hb_000457_290 Hb_001604_150 Hb_001604_150 Hb_011609_090--Hb_001604_150 Hb_000189_570 Hb_000189_570 Hb_004123_020--Hb_000189_570 Hb_004123_020--Hb_002045_060 Hb_007904_230 Hb_007904_230 Hb_004123_020--Hb_007904_230 Hb_005276_040 Hb_005276_040 Hb_004123_020--Hb_005276_040 Hb_000364_050 Hb_000364_050 Hb_004123_020--Hb_000364_050 Hb_002045_060--Hb_005276_040 Hb_001892_070 Hb_001892_070 Hb_002045_060--Hb_001892_070 Hb_000032_370 Hb_000032_370 Hb_002045_060--Hb_000032_370 Hb_000428_060 Hb_000428_060 Hb_002045_060--Hb_000428_060 Hb_004317_030 Hb_004317_030 Hb_002045_060--Hb_004317_030 Hb_008232_010 Hb_008232_010 Hb_015183_060--Hb_008232_010 Hb_000982_080 Hb_000982_080 Hb_015183_060--Hb_000982_080 Hb_000673_020 Hb_000673_020 Hb_015183_060--Hb_000673_020 Hb_002016_080 Hb_002016_080 Hb_015183_060--Hb_002016_080 Hb_015183_060--Hb_001892_070 Hb_000920_200 Hb_000920_200 Hb_015183_060--Hb_000920_200 Hb_001171_050--Hb_000673_020 Hb_000934_190 Hb_000934_190 Hb_001171_050--Hb_000934_190 Hb_001171_050--Hb_015183_060 Hb_005656_100 Hb_005656_100 Hb_001171_050--Hb_005656_100 Hb_001171_050--Hb_002016_080 Hb_013405_140 Hb_013405_140 Hb_001171_050--Hb_013405_140 Hb_000465_070 Hb_000465_070 Hb_000457_290--Hb_000465_070 Hb_000035_480 Hb_000035_480 Hb_000457_290--Hb_000035_480 Hb_140627_010 Hb_140627_010 Hb_000457_290--Hb_140627_010 Hb_000403_070 Hb_000403_070 Hb_000457_290--Hb_000403_070 Hb_000457_290--Hb_001892_070 Hb_002232_060 Hb_002232_060 Hb_000457_290--Hb_002232_060 Hb_002307_310 Hb_002307_310 Hb_001604_150--Hb_002307_310 Hb_031910_020 Hb_031910_020 Hb_001604_150--Hb_031910_020 Hb_002631_180 Hb_002631_180 Hb_001604_150--Hb_002631_180 Hb_000215_360 Hb_000215_360 Hb_001604_150--Hb_000215_360 Hb_000009_050 Hb_000009_050 Hb_001604_150--Hb_000009_050 Hb_004429_020 Hb_004429_020 Hb_001604_150--Hb_004429_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0433863 0.122815 0.313987 0.131185 0.015861 0.0586096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.179807 0.33957 0.350528 0.26972 0.300637

CAGE analysis