Hb_011609_140

Information

Type -
Description -
Location Contig11609: 114716-127817
Sequence    

Annotation

kegg
ID cic:CICLE_v10010942mg
description hypothetical protein
nr
ID KDP32943.1
description hypothetical protein JCGZ_12974 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KD40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12974 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04962: 114773-117798 , PASA_asmbl_04963: 118044-127049 , PASA_asmbl_04964: 127240-142713
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011609_140 0.0 - - hypothetical protein JCGZ_12974 [Jatropha curcas]
2 Hb_000679_310 0.0618472633 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
3 Hb_000484_030 0.0644691866 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
4 Hb_001922_150 0.0697475322 - - PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Jatropha curcas]
5 Hb_001635_160 0.0718800692 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
6 Hb_001751_140 0.0773521901 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
7 Hb_003680_150 0.0780066081 - - srpk, putative [Ricinus communis]
8 Hb_000527_010 0.0788106604 - - katanin P80 subunit, putative [Ricinus communis]
9 Hb_000975_040 0.0788377037 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
10 Hb_000025_410 0.0788533244 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
11 Hb_004020_040 0.0789330194 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
12 Hb_000313_220 0.0793602694 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
13 Hb_000044_040 0.0795177865 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
14 Hb_014361_070 0.0799697704 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
15 Hb_004097_070 0.0809119967 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
16 Hb_006373_010 0.08109338 - - Potassium transporter 11 [Gossypium arboreum]
17 Hb_008406_200 0.081641647 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
18 Hb_005653_090 0.0819812356 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
19 Hb_000976_140 0.0828456814 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
20 Hb_028962_020 0.0835621405 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]

Gene co-expression network

sample Hb_011609_140 Hb_011609_140 Hb_000679_310 Hb_000679_310 Hb_011609_140--Hb_000679_310 Hb_000484_030 Hb_000484_030 Hb_011609_140--Hb_000484_030 Hb_001922_150 Hb_001922_150 Hb_011609_140--Hb_001922_150 Hb_001635_160 Hb_001635_160 Hb_011609_140--Hb_001635_160 Hb_001751_140 Hb_001751_140 Hb_011609_140--Hb_001751_140 Hb_003680_150 Hb_003680_150 Hb_011609_140--Hb_003680_150 Hb_000289_040 Hb_000289_040 Hb_000679_310--Hb_000289_040 Hb_000076_160 Hb_000076_160 Hb_000679_310--Hb_000076_160 Hb_000696_230 Hb_000696_230 Hb_000679_310--Hb_000696_230 Hb_028962_020 Hb_028962_020 Hb_000679_310--Hb_028962_020 Hb_002876_130 Hb_002876_130 Hb_000679_310--Hb_002876_130 Hb_008453_140 Hb_008453_140 Hb_000484_030--Hb_008453_140 Hb_001409_020 Hb_001409_020 Hb_000484_030--Hb_001409_020 Hb_001408_040 Hb_001408_040 Hb_000484_030--Hb_001408_040 Hb_007416_340 Hb_007416_340 Hb_000484_030--Hb_007416_340 Hb_003125_120 Hb_003125_120 Hb_000484_030--Hb_003125_120 Hb_000484_030--Hb_000696_230 Hb_000976_140 Hb_000976_140 Hb_001922_150--Hb_000976_140 Hb_019280_030 Hb_019280_030 Hb_001922_150--Hb_019280_030 Hb_000313_220 Hb_000313_220 Hb_001922_150--Hb_000313_220 Hb_005730_040 Hb_005730_040 Hb_001922_150--Hb_005730_040 Hb_004020_040 Hb_004020_040 Hb_001922_150--Hb_004020_040 Hb_001922_150--Hb_007416_340 Hb_005460_050 Hb_005460_050 Hb_001635_160--Hb_005460_050 Hb_008120_030 Hb_008120_030 Hb_001635_160--Hb_008120_030 Hb_000035_110 Hb_000035_110 Hb_001635_160--Hb_000035_110 Hb_105328_020 Hb_105328_020 Hb_001635_160--Hb_105328_020 Hb_001377_310 Hb_001377_310 Hb_001635_160--Hb_001377_310 Hb_002398_030 Hb_002398_030 Hb_001635_160--Hb_002398_030 Hb_001635_040 Hb_001635_040 Hb_001751_140--Hb_001635_040 Hb_003927_040 Hb_003927_040 Hb_001751_140--Hb_003927_040 Hb_008568_020 Hb_008568_020 Hb_001751_140--Hb_008568_020 Hb_001751_140--Hb_000076_160 Hb_001728_050 Hb_001728_050 Hb_001751_140--Hb_001728_050 Hb_000803_070 Hb_000803_070 Hb_001751_140--Hb_000803_070 Hb_002823_030 Hb_002823_030 Hb_003680_150--Hb_002823_030 Hb_007576_110 Hb_007576_110 Hb_003680_150--Hb_007576_110 Hb_014361_070 Hb_014361_070 Hb_003680_150--Hb_014361_070 Hb_000853_230 Hb_000853_230 Hb_003680_150--Hb_000853_230 Hb_023480_010 Hb_023480_010 Hb_003680_150--Hb_023480_010 Hb_003680_150--Hb_000484_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3809 14.2858 11.3447 14.2253 11.9722 14.0049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1487 11.3914 7.186 12.3315 12.0559

CAGE analysis