Hb_011609_190

Information

Type -
Description -
Location Contig11609: 186725-190120
Sequence    

Annotation

kegg
ID cmo:103495723
description 14-3-3-like protein
nr
ID AEA03663.1
description 14-3-3 protein 2 [Hevea brasiliensis]
swissprot
ID P93259
description 14-3-3-like protein OS=Mesembryanthemum crystallinum GN=GBF PE=2 SV=1
trembl
ID F2YZ43
description 14-3-3 protein 2 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0019904
description 14-3-3-like protein a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04972: 186686-190212 , PASA_asmbl_04973: 186686-189367 , PASA_asmbl_04974: 189560-190106 , PASA_asmbl_04975: 187242-187417 , PASA_asmbl_04976: 186944-187078
cDNA
(Sanger)
(ID:Location)		 002_L19.ab1: 186748-189181 , 010_N11.ab1: 186742-188587 , 014_B05.ab1: 186743-188598 , 022_I13.ab1: 186743-188214 , 023_D19.ab1: 186743-188494 , 032_P01.ab1: 186748-189131 , 049_P17.ab1: 186748-188579

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011609_190 0.0 - - 14-3-3 protein 2 [Hevea brasiliensis]
2 Hb_000117_040 0.0686822563 - - 30S ribosomal protein S6A [Hevea brasiliensis]
3 Hb_000179_250 0.0764398757 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
4 Hb_012654_020 0.0768977985 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001433_170 0.0789198718 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
6 Hb_002172_030 0.0864480926 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
7 Hb_000491_080 0.0880847576 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
8 Hb_011316_030 0.0905362471 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
9 Hb_000176_140 0.0907617926 - - PREDICTED: bystin [Jatropha curcas]
10 Hb_001776_080 0.0931514299 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
11 Hb_026048_090 0.0933901464 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000062_230 0.0937238936 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
13 Hb_002044_090 0.0960988569 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
14 Hb_127979_010 0.0964518524 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
15 Hb_002377_040 0.1049129999 - - serine/threonine protein kinase, putative [Ricinus communis]
16 Hb_002377_050 0.105512686 - - Agmatine deiminase, putative [Ricinus communis]
17 Hb_002232_180 0.1055234918 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
18 Hb_003906_120 0.1077470997 - - -
19 Hb_005754_020 0.1078932841 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
20 Hb_006029_010 0.1080538088 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]

Gene co-expression network

sample Hb_011609_190 Hb_011609_190 Hb_000117_040 Hb_000117_040 Hb_011609_190--Hb_000117_040 Hb_000179_250 Hb_000179_250 Hb_011609_190--Hb_000179_250 Hb_012654_020 Hb_012654_020 Hb_011609_190--Hb_012654_020 Hb_001433_170 Hb_001433_170 Hb_011609_190--Hb_001433_170 Hb_002172_030 Hb_002172_030 Hb_011609_190--Hb_002172_030 Hb_000491_080 Hb_000491_080 Hb_011609_190--Hb_000491_080 Hb_000163_290 Hb_000163_290 Hb_000117_040--Hb_000163_290 Hb_026048_090 Hb_026048_090 Hb_000117_040--Hb_026048_090 Hb_000371_110 Hb_000371_110 Hb_000117_040--Hb_000371_110 Hb_004813_010 Hb_004813_010 Hb_000117_040--Hb_004813_010 Hb_000117_040--Hb_000179_250 Hb_000176_140 Hb_000176_140 Hb_000179_250--Hb_000176_140 Hb_000179_250--Hb_001433_170 Hb_002044_090 Hb_002044_090 Hb_000179_250--Hb_002044_090 Hb_011316_030 Hb_011316_030 Hb_000179_250--Hb_011316_030 Hb_001776_080 Hb_001776_080 Hb_000179_250--Hb_001776_080 Hb_012654_020--Hb_002172_030 Hb_005410_010 Hb_005410_010 Hb_012654_020--Hb_005410_010 Hb_002078_040 Hb_002078_040 Hb_012654_020--Hb_002078_040 Hb_012654_020--Hb_001776_080 Hb_000050_120 Hb_000050_120 Hb_012654_020--Hb_000050_120 Hb_000057_060 Hb_000057_060 Hb_001433_170--Hb_000057_060 Hb_127979_010 Hb_127979_010 Hb_001433_170--Hb_127979_010 Hb_001433_170--Hb_000176_140 Hb_001433_170--Hb_026048_090 Hb_001846_080 Hb_001846_080 Hb_002172_030--Hb_001846_080 Hb_002172_030--Hb_005410_010 Hb_002172_030--Hb_000050_120 Hb_154381_050 Hb_154381_050 Hb_002172_030--Hb_154381_050 Hb_160818_010 Hb_160818_010 Hb_000491_080--Hb_160818_010 Hb_000491_080--Hb_011316_030 Hb_000491_080--Hb_001776_080 Hb_002377_050 Hb_002377_050 Hb_000491_080--Hb_002377_050 Hb_002818_040 Hb_002818_040 Hb_000491_080--Hb_002818_040 Hb_006029_010 Hb_006029_010 Hb_000491_080--Hb_006029_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5335.64 598.994 380.59 210.711 5723.32 4011.75
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2821.94 1952.59 2921.38 595.212 143.873

CAGE analysis