Hb_011609_200

Information

Type -
Description -
Location Contig11609: 192324-196599
Sequence    

Annotation

kegg
ID pop:POPTR_0004s10130g
description hypothetical protein
nr
ID XP_011011191.1
description PREDICTED: ultraviolet-B receptor UVR8-like isoform X3 [Populus euphratica]
swissprot
ID F2Z461
description E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1
trembl
ID B9H3S0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s10130g PE=4 SV=2
Gene Ontology
ID GO:0019904
description regulator of chromosome condensation family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011609_200 0.0 - - PREDICTED: ultraviolet-B receptor UVR8-like isoform X3 [Populus euphratica]
2 Hb_160479_010 0.1364785897 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_033691_010 0.1366093772 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
4 Hb_010068_010 0.1411646707 - - PREDICTED: uncharacterized protein LOC105633273 [Jatropha curcas]
5 Hb_000156_150 0.1428055988 - - hypothetical protein JCGZ_04603 [Jatropha curcas]
6 Hb_000926_240 0.1453531818 - - hypothetical protein PRUPE_ppb018041mg [Prunus persica]
7 Hb_104362_010 0.1477312815 - - hypothetical protein POPTR_0247s002302g, partial [Populus trichocarpa]
8 Hb_001369_510 0.1528057723 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
9 Hb_000935_060 0.1529039304 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
10 Hb_051900_020 0.1555562678 - - JHL22C18.7 [Jatropha curcas]
11 Hb_008066_020 0.1564866245 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004102_150 0.1583482064 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
13 Hb_001428_010 0.160009466 - - PREDICTED: transcription factor PRE1-like [Jatropha curcas]
14 Hb_100953_010 0.1613049761 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
15 Hb_002235_330 0.1679686153 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
16 Hb_004317_020 0.1694632011 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7-like [Malus domestica]
17 Hb_041332_010 0.1709743307 - - DNA binding protein, putative [Ricinus communis]
18 Hb_007138_010 0.1713511265 - - PREDICTED: putative laccase-9 [Jatropha curcas]
19 Hb_000566_060 0.1738433036 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002267_110 0.1783151122 - - -

Gene co-expression network

sample Hb_011609_200 Hb_011609_200 Hb_160479_010 Hb_160479_010 Hb_011609_200--Hb_160479_010 Hb_033691_010 Hb_033691_010 Hb_011609_200--Hb_033691_010 Hb_010068_010 Hb_010068_010 Hb_011609_200--Hb_010068_010 Hb_000156_150 Hb_000156_150 Hb_011609_200--Hb_000156_150 Hb_000926_240 Hb_000926_240 Hb_011609_200--Hb_000926_240 Hb_104362_010 Hb_104362_010 Hb_011609_200--Hb_104362_010 Hb_160479_010--Hb_010068_010 Hb_160479_010--Hb_033691_010 Hb_160479_010--Hb_000926_240 Hb_051900_020 Hb_051900_020 Hb_160479_010--Hb_051900_020 Hb_004317_020 Hb_004317_020 Hb_160479_010--Hb_004317_020 Hb_000935_060 Hb_000935_060 Hb_160479_010--Hb_000935_060 Hb_033691_010--Hb_010068_010 Hb_033691_010--Hb_051900_020 Hb_033691_010--Hb_000926_240 Hb_001369_510 Hb_001369_510 Hb_033691_010--Hb_001369_510 Hb_041332_010 Hb_041332_010 Hb_033691_010--Hb_041332_010 Hb_010068_010--Hb_000926_240 Hb_010068_010--Hb_004317_020 Hb_010068_010--Hb_051900_020 Hb_000566_060 Hb_000566_060 Hb_010068_010--Hb_000566_060 Hb_001428_010 Hb_001428_010 Hb_000156_150--Hb_001428_010 Hb_000156_150--Hb_104362_010 Hb_006012_030 Hb_006012_030 Hb_000156_150--Hb_006012_030 Hb_002235_330 Hb_002235_330 Hb_000156_150--Hb_002235_330 Hb_000270_590 Hb_000270_590 Hb_000156_150--Hb_000270_590 Hb_000926_240--Hb_000935_060 Hb_004102_150 Hb_004102_150 Hb_000926_240--Hb_004102_150 Hb_000926_240--Hb_004317_020 Hb_034858_010 Hb_034858_010 Hb_000926_240--Hb_034858_010 Hb_104362_010--Hb_001428_010 Hb_003494_100 Hb_003494_100 Hb_104362_010--Hb_003494_100 Hb_104362_010--Hb_034858_010 Hb_104362_010--Hb_004317_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.246947 1.34817 0 0.0626475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.104368 0

CAGE analysis