Hb_011609_210

Information

Type -
Description -
Location Contig11609: 196762-201578
Sequence    

Annotation

kegg
ID tcc:TCM_011393
description hypothetical protein
nr
ID XP_007045697.1
description Uncharacterized protein TCM_011393 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EGU4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_011393 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011609_210 0.0 - - Uncharacterized protein TCM_011393 [Theobroma cacao]
2 Hb_010565_030 0.1052953372 - - hypothetical protein VITISV_006810 [Vitis vinifera]
3 Hb_012404_080 0.1141729016 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
4 Hb_005542_010 0.1226330188 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
5 Hb_000977_150 0.1269765884 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
6 Hb_000454_160 0.1351383039 - - amidophosphoribosyltransferase, putative [Ricinus communis]
7 Hb_018272_050 0.145155467 - - hypothetical protein VITISV_037409 [Vitis vinifera]
8 Hb_001080_030 0.150306043 - - AMP dependent ligase, putative [Ricinus communis]
9 Hb_011472_050 0.1510510001 - - -
10 Hb_005695_080 0.1554513777 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
11 Hb_000237_160 0.1557475499 - - BEL1-like homeodomain protein 1 [Morus notabilis]
12 Hb_004319_060 0.1608356234 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
13 Hb_000366_030 0.1611965454 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Jatropha curcas]
14 Hb_065525_070 0.1617549211 - - unnamed protein product [Homo sapiens]
15 Hb_000123_340 0.164313598 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
16 Hb_001195_370 0.1648269913 - - -
17 Hb_000731_290 0.1649179358 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_001793_030 0.1660215576 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
19 Hb_001514_150 0.1662224298 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
20 Hb_000963_090 0.1673353142 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_011609_210 Hb_011609_210 Hb_010565_030 Hb_010565_030 Hb_011609_210--Hb_010565_030 Hb_012404_080 Hb_012404_080 Hb_011609_210--Hb_012404_080 Hb_005542_010 Hb_005542_010 Hb_011609_210--Hb_005542_010 Hb_000977_150 Hb_000977_150 Hb_011609_210--Hb_000977_150 Hb_000454_160 Hb_000454_160 Hb_011609_210--Hb_000454_160 Hb_018272_050 Hb_018272_050 Hb_011609_210--Hb_018272_050 Hb_010565_030--Hb_005542_010 Hb_011472_050 Hb_011472_050 Hb_010565_030--Hb_011472_050 Hb_000173_110 Hb_000173_110 Hb_010565_030--Hb_000173_110 Hb_000123_340 Hb_000123_340 Hb_010565_030--Hb_000123_340 Hb_002110_110 Hb_002110_110 Hb_010565_030--Hb_002110_110 Hb_012404_080--Hb_000454_160 Hb_001080_030 Hb_001080_030 Hb_012404_080--Hb_001080_030 Hb_012404_080--Hb_000977_150 Hb_000731_290 Hb_000731_290 Hb_012404_080--Hb_000731_290 Hb_005695_080 Hb_005695_080 Hb_012404_080--Hb_005695_080 Hb_005542_010--Hb_011472_050 Hb_005542_010--Hb_002110_110 Hb_005542_010--Hb_000173_110 Hb_009434_060 Hb_009434_060 Hb_005542_010--Hb_009434_060 Hb_000032_600 Hb_000032_600 Hb_000977_150--Hb_000032_600 Hb_001054_060 Hb_001054_060 Hb_000977_150--Hb_001054_060 Hb_002811_190 Hb_002811_190 Hb_000977_150--Hb_002811_190 Hb_067664_010 Hb_067664_010 Hb_000977_150--Hb_067664_010 Hb_000329_080 Hb_000329_080 Hb_000977_150--Hb_000329_080 Hb_001195_370 Hb_001195_370 Hb_000977_150--Hb_001195_370 Hb_000454_160--Hb_018272_050 Hb_000454_160--Hb_000977_150 Hb_002518_180 Hb_002518_180 Hb_000454_160--Hb_002518_180 Hb_000414_180 Hb_000414_180 Hb_000454_160--Hb_000414_180 Hb_000237_160 Hb_000237_160 Hb_018272_050--Hb_000237_160 Hb_018272_050--Hb_012404_080 Hb_046117_030 Hb_046117_030 Hb_018272_050--Hb_046117_030 Hb_003799_060 Hb_003799_060 Hb_018272_050--Hb_003799_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0376038 0.539047 0.224859 0.322051 0.0235822 0.0605608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0381354 0.075019 0.0856788 0.488821 1.49646

CAGE analysis