Hb_011612_010

Information

Type -
Description -
Location Contig11612: 33786-34744
Sequence    

Annotation

kegg
ID pop:POPTR_0014s07380g
description POPTRDRAFT_244304; hypothetical protein
nr
ID XP_012084540.1
description PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
swissprot
ID Q9FNZ2
description Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1
trembl
ID A0A067JU76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19808 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011612_010 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
2 Hb_002701_080 0.0590038305 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]
3 Hb_000398_190 0.0813308684 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
4 Hb_001504_160 0.0845520073 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
5 Hb_012654_010 0.0870808773 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
6 Hb_012193_010 0.0900441386 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_004162_280 0.0943477521 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
8 Hb_175338_020 0.0945305587 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
9 Hb_002133_030 0.0960434458 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
10 Hb_000352_090 0.097401537 - - PREDICTED: syntaxin-22-like isoform X1 [Jatropha curcas]
11 Hb_000076_080 0.0975808244 - - PREDICTED: protein MOS2 [Jatropha curcas]
12 Hb_165350_010 0.0976034498 - - unnamed protein product [Triticum aestivum]
13 Hb_000139_250 0.098458891 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
14 Hb_000861_070 0.0988709855 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004724_360 0.0991080734 - - OTU-like cysteine protease family protein [Populus trichocarpa]
16 Hb_009620_040 0.1002850549 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
17 Hb_002652_040 0.1005553549 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
18 Hb_004678_020 0.1013763585 - - PREDICTED: protein YIF1B [Jatropha curcas]
19 Hb_004656_060 0.1031169829 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
20 Hb_004701_030 0.1033650321 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]

Gene co-expression network

sample Hb_011612_010 Hb_011612_010 Hb_002701_080 Hb_002701_080 Hb_011612_010--Hb_002701_080 Hb_000398_190 Hb_000398_190 Hb_011612_010--Hb_000398_190 Hb_001504_160 Hb_001504_160 Hb_011612_010--Hb_001504_160 Hb_012654_010 Hb_012654_010 Hb_011612_010--Hb_012654_010 Hb_012193_010 Hb_012193_010 Hb_011612_010--Hb_012193_010 Hb_004162_280 Hb_004162_280 Hb_011612_010--Hb_004162_280 Hb_002701_080--Hb_000398_190 Hb_002701_080--Hb_012654_010 Hb_002701_080--Hb_001504_160 Hb_009620_040 Hb_009620_040 Hb_002701_080--Hb_009620_040 Hb_000230_330 Hb_000230_330 Hb_002701_080--Hb_000230_330 Hb_000398_190--Hb_001504_160 Hb_000398_190--Hb_012654_010 Hb_000398_190--Hb_000230_330 Hb_000041_220 Hb_000041_220 Hb_000398_190--Hb_000041_220 Hb_000076_080 Hb_000076_080 Hb_001504_160--Hb_000076_080 Hb_001504_160--Hb_012654_010 Hb_001504_160--Hb_000230_330 Hb_004724_360 Hb_004724_360 Hb_001504_160--Hb_004724_360 Hb_000107_100 Hb_000107_100 Hb_001504_160--Hb_000107_100 Hb_003384_030 Hb_003384_030 Hb_001504_160--Hb_003384_030 Hb_012654_010--Hb_000107_100 Hb_000139_250 Hb_000139_250 Hb_012654_010--Hb_000139_250 Hb_001057_010 Hb_001057_010 Hb_012654_010--Hb_001057_010 Hb_005214_160 Hb_005214_160 Hb_012654_010--Hb_005214_160 Hb_000057_040 Hb_000057_040 Hb_012193_010--Hb_000057_040 Hb_001047_100 Hb_001047_100 Hb_012193_010--Hb_001047_100 Hb_000099_240 Hb_000099_240 Hb_012193_010--Hb_000099_240 Hb_004198_010 Hb_004198_010 Hb_012193_010--Hb_004198_010 Hb_105386_010 Hb_105386_010 Hb_012193_010--Hb_105386_010 Hb_144787_030 Hb_144787_030 Hb_004162_280--Hb_144787_030 Hb_175338_020 Hb_175338_020 Hb_004162_280--Hb_175338_020 Hb_001541_020 Hb_001541_020 Hb_004162_280--Hb_001541_020 Hb_000236_100 Hb_000236_100 Hb_004162_280--Hb_000236_100 Hb_000510_310 Hb_000510_310 Hb_004162_280--Hb_000510_310 Hb_004162_280--Hb_000139_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.6072 39.8646 20.2102 22.0779 98.9354 88.3203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.2443 36.5613 35.5708 35.3597 7.08518

CAGE analysis