Hb_011616_020

Information

Type -
Description -
Location Contig11616: 16998-18788
Sequence    

Annotation

kegg
ID cic:CICLE_v10004968mg
description hypothetical protein
nr
ID XP_006421074.1
description hypothetical protein CICLE_v10004968mg [Citrus clementina]
swissprot
ID P23176
description Glucoamylase I OS=Aspergillus kawachii GN=gaI PE=1 SV=1
trembl
ID F6I491
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0062g00900 PE=4 SV=1
Gene Ontology
ID GO:0005524
description water chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04981: 17134-84324
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011616_020 0.0 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]
2 Hb_005250_030 0.1019284297 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
3 Hb_005523_010 0.1074561046 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
4 Hb_000062_450 0.1244856653 - - hypothetical protein MTR_081s0009, partial [Medicago truncatula]
5 Hb_156279_010 0.1264156065 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
6 Hb_003632_030 0.1270713935 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
7 Hb_000815_170 0.1275380248 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
8 Hb_005801_020 0.1279109866 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
9 Hb_030131_030 0.1312539016 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
10 Hb_013459_010 0.1364185301 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
11 Hb_012098_070 0.1373287261 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
12 Hb_007545_130 0.1402232603 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
13 Hb_000110_270 0.1414652532 - - prp4, putative [Ricinus communis]
14 Hb_099270_030 0.1417020445 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
15 Hb_002631_250 0.1424157799 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]
16 Hb_006618_050 0.1427793221 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
17 Hb_000479_170 0.1432660864 - - chaperone clpb, putative [Ricinus communis]
18 Hb_002518_120 0.1433865784 - - hypothetical protein RCOM_0731250 [Ricinus communis]
19 Hb_003089_020 0.1439929175 - - PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
20 Hb_000599_230 0.1467274469 - - -

Gene co-expression network

sample Hb_011616_020 Hb_011616_020 Hb_005250_030 Hb_005250_030 Hb_011616_020--Hb_005250_030 Hb_005523_010 Hb_005523_010 Hb_011616_020--Hb_005523_010 Hb_000062_450 Hb_000062_450 Hb_011616_020--Hb_000062_450 Hb_156279_010 Hb_156279_010 Hb_011616_020--Hb_156279_010 Hb_003632_030 Hb_003632_030 Hb_011616_020--Hb_003632_030 Hb_000815_170 Hb_000815_170 Hb_011616_020--Hb_000815_170 Hb_007545_130 Hb_007545_130 Hb_005250_030--Hb_007545_130 Hb_005250_030--Hb_000815_170 Hb_013459_010 Hb_013459_010 Hb_005250_030--Hb_013459_010 Hb_006618_050 Hb_006618_050 Hb_005250_030--Hb_006618_050 Hb_005250_030--Hb_156279_010 Hb_003506_050 Hb_003506_050 Hb_005250_030--Hb_003506_050 Hb_005523_010--Hb_005250_030 Hb_010757_030 Hb_010757_030 Hb_005523_010--Hb_010757_030 Hb_002986_070 Hb_002986_070 Hb_005523_010--Hb_002986_070 Hb_000529_140 Hb_000529_140 Hb_005523_010--Hb_000529_140 Hb_005523_010--Hb_013459_010 Hb_005801_020 Hb_005801_020 Hb_000062_450--Hb_005801_020 Hb_006909_010 Hb_006909_010 Hb_000062_450--Hb_006909_010 Hb_000062_450--Hb_156279_010 Hb_025193_040 Hb_025193_040 Hb_000062_450--Hb_025193_040 Hb_000062_450--Hb_000815_170 Hb_004143_160 Hb_004143_160 Hb_000062_450--Hb_004143_160 Hb_156279_010--Hb_000815_170 Hb_156279_010--Hb_005801_020 Hb_099270_030 Hb_099270_030 Hb_156279_010--Hb_099270_030 Hb_156279_010--Hb_006618_050 Hb_006295_020 Hb_006295_020 Hb_156279_010--Hb_006295_020 Hb_022250_100 Hb_022250_100 Hb_003632_030--Hb_022250_100 Hb_006846_080 Hb_006846_080 Hb_003632_030--Hb_006846_080 Hb_119600_050 Hb_119600_050 Hb_003632_030--Hb_119600_050 Hb_005250_010 Hb_005250_010 Hb_003632_030--Hb_005250_010 Hb_001411_030 Hb_001411_030 Hb_003632_030--Hb_001411_030 Hb_000562_050 Hb_000562_050 Hb_003632_030--Hb_000562_050 Hb_000815_170--Hb_005801_020 Hb_135572_010 Hb_135572_010 Hb_000815_170--Hb_135572_010 Hb_001623_280 Hb_001623_280 Hb_000815_170--Hb_001623_280 Hb_000714_040 Hb_000714_040 Hb_000815_170--Hb_000714_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.83004 11.3658 6.35606 13.3848 15.2423 19.2098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.1748 4.41859 8.8663 21.9788 53.9956

CAGE analysis