Hb_011618_090

Information

Type desease resistance
Description Gene Name: ABC_tran
Location Contig11618: 128730-130898
Sequence    

Annotation

kegg
ID rcu:RCOM_0894930
description ATP-dependent transporter, putative (EC:3.6.3.28)
nr
ID AIU41643.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9M1H3
description ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1
trembl
ID A0A097P9R9
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCF4 PE=2 SV=1
Gene Ontology
ID GO:0005524
description abc transporter f family member 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011618_090 0.0 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
2 Hb_003835_070 0.0576438553 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
3 Hb_000317_370 0.0624433778 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
4 Hb_000579_230 0.0647136964 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
5 Hb_000922_360 0.0671248865 - - -
6 Hb_003544_060 0.0674207962 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
7 Hb_007083_030 0.0677120773 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
8 Hb_001754_040 0.0682526285 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
9 Hb_000025_280 0.0686627697 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
10 Hb_002889_020 0.0701869344 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
11 Hb_009270_020 0.070857152 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
12 Hb_002205_250 0.0715780339 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
13 Hb_012092_060 0.0726082516 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
14 Hb_140049_080 0.0733151272 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
15 Hb_000590_050 0.0734427197 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
16 Hb_000614_210 0.07356369 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
17 Hb_004676_010 0.073834187 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
18 Hb_004586_290 0.0741115864 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
19 Hb_000537_050 0.0742399394 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
20 Hb_001814_030 0.0748033914 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]

Gene co-expression network

sample Hb_011618_090 Hb_011618_090 Hb_003835_070 Hb_003835_070 Hb_011618_090--Hb_003835_070 Hb_000317_370 Hb_000317_370 Hb_011618_090--Hb_000317_370 Hb_000579_230 Hb_000579_230 Hb_011618_090--Hb_000579_230 Hb_000922_360 Hb_000922_360 Hb_011618_090--Hb_000922_360 Hb_003544_060 Hb_003544_060 Hb_011618_090--Hb_003544_060 Hb_007083_030 Hb_007083_030 Hb_011618_090--Hb_007083_030 Hb_002205_250 Hb_002205_250 Hb_003835_070--Hb_002205_250 Hb_002217_170 Hb_002217_170 Hb_003835_070--Hb_002217_170 Hb_000614_210 Hb_000614_210 Hb_003835_070--Hb_000614_210 Hb_105105_010 Hb_105105_010 Hb_003835_070--Hb_105105_010 Hb_012194_030 Hb_012194_030 Hb_003835_070--Hb_012194_030 Hb_000317_370--Hb_002217_170 Hb_000025_280 Hb_000025_280 Hb_000317_370--Hb_000025_280 Hb_000317_370--Hb_003835_070 Hb_000976_210 Hb_000976_210 Hb_000317_370--Hb_000976_210 Hb_000258_160 Hb_000258_160 Hb_000317_370--Hb_000258_160 Hb_012395_140 Hb_012395_140 Hb_000579_230--Hb_012395_140 Hb_002815_030 Hb_002815_030 Hb_000579_230--Hb_002815_030 Hb_000395_070 Hb_000395_070 Hb_000579_230--Hb_000395_070 Hb_104061_020 Hb_104061_020 Hb_000579_230--Hb_104061_020 Hb_009270_020 Hb_009270_020 Hb_000579_230--Hb_009270_020 Hb_004676_010 Hb_004676_010 Hb_000579_230--Hb_004676_010 Hb_003464_090 Hb_003464_090 Hb_000922_360--Hb_003464_090 Hb_000011_100 Hb_000011_100 Hb_000922_360--Hb_000011_100 Hb_003370_030 Hb_003370_030 Hb_000922_360--Hb_003370_030 Hb_001006_330 Hb_001006_330 Hb_000922_360--Hb_001006_330 Hb_001430_080 Hb_001430_080 Hb_000922_360--Hb_001430_080 Hb_005918_010 Hb_005918_010 Hb_003544_060--Hb_005918_010 Hb_002456_010 Hb_002456_010 Hb_003544_060--Hb_002456_010 Hb_003906_200 Hb_003906_200 Hb_003544_060--Hb_003906_200 Hb_002234_090 Hb_002234_090 Hb_003544_060--Hb_002234_090 Hb_000836_460 Hb_000836_460 Hb_003544_060--Hb_000836_460 Hb_001377_160 Hb_001377_160 Hb_007083_030--Hb_001377_160 Hb_007083_030--Hb_000579_230 Hb_003943_010 Hb_003943_010 Hb_007083_030--Hb_003943_010 Hb_007083_030--Hb_002815_030 Hb_001946_340 Hb_001946_340 Hb_007083_030--Hb_001946_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.5019 29.6795 17.7104 19.8188 17.0379 20.1738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.228 13.7844 18.2958 30.9759 19.6716

CAGE analysis