Hb_011618_110

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig11618: 151594-154317
Sequence    

Annotation

kegg
ID cit:102611807
description probable disease resistance protein At5g63020-like
nr
ID XP_006465455.1
description PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
swissprot
ID Q8RXS5
description Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2
trembl
ID A0A067ESY9
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045686mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011618_110 0.0 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
2 Hb_002636_120 0.032975852 - - Protein bem46, putative [Ricinus communis]
3 Hb_011853_020 0.067257264 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
4 Hb_096027_010 0.0751717536 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_000003_370 0.0752326554 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
6 Hb_004202_020 0.0767124224 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001975_110 0.0892466509 - - -
8 Hb_001136_160 0.089911627 - - catalytic, putative [Ricinus communis]
9 Hb_001136_040 0.0917936554 - - amino acid transporter, putative [Ricinus communis]
10 Hb_010883_170 0.0919554561 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
11 Hb_002221_060 0.0978045378 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
12 Hb_000230_300 0.0984886766 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
13 Hb_000003_380 0.1005854841 - - conserved hypothetical protein [Ricinus communis]
14 Hb_040852_010 0.1009351469 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006977_010 0.1018788674 - - unnamed protein product [Vitis vinifera]
16 Hb_007122_020 0.1055437815 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
17 Hb_003376_020 0.1070675727 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_026218_010 0.108727327 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001047_090 0.1095898587 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
20 Hb_152910_050 0.1113533148 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011618_110 Hb_011618_110 Hb_002636_120 Hb_002636_120 Hb_011618_110--Hb_002636_120 Hb_011853_020 Hb_011853_020 Hb_011618_110--Hb_011853_020 Hb_096027_010 Hb_096027_010 Hb_011618_110--Hb_096027_010 Hb_000003_370 Hb_000003_370 Hb_011618_110--Hb_000003_370 Hb_004202_020 Hb_004202_020 Hb_011618_110--Hb_004202_020 Hb_001975_110 Hb_001975_110 Hb_011618_110--Hb_001975_110 Hb_002636_120--Hb_001975_110 Hb_002636_120--Hb_011853_020 Hb_002636_120--Hb_000003_370 Hb_026218_010 Hb_026218_010 Hb_002636_120--Hb_026218_010 Hb_002636_120--Hb_096027_010 Hb_011853_020--Hb_096027_010 Hb_001136_040 Hb_001136_040 Hb_011853_020--Hb_001136_040 Hb_011853_020--Hb_000003_370 Hb_001136_160 Hb_001136_160 Hb_011853_020--Hb_001136_160 Hb_029977_030 Hb_029977_030 Hb_096027_010--Hb_029977_030 Hb_001766_130 Hb_001766_130 Hb_096027_010--Hb_001766_130 Hb_000230_300 Hb_000230_300 Hb_096027_010--Hb_000230_300 Hb_000003_370--Hb_004202_020 Hb_000003_370--Hb_001136_160 Hb_004223_060 Hb_004223_060 Hb_000003_370--Hb_004223_060 Hb_000483_450 Hb_000483_450 Hb_004202_020--Hb_000483_450 Hb_001047_090 Hb_001047_090 Hb_004202_020--Hb_001047_090 Hb_040852_010 Hb_040852_010 Hb_004202_020--Hb_040852_010 Hb_003894_110 Hb_003894_110 Hb_004202_020--Hb_003894_110 Hb_000392_110 Hb_000392_110 Hb_004202_020--Hb_000392_110 Hb_003376_020 Hb_003376_020 Hb_004202_020--Hb_003376_020 Hb_000005_290 Hb_000005_290 Hb_001975_110--Hb_000005_290 Hb_007122_020 Hb_007122_020 Hb_001975_110--Hb_007122_020 Hb_002309_020 Hb_002309_020 Hb_001975_110--Hb_002309_020 Hb_000317_380 Hb_000317_380 Hb_001975_110--Hb_000317_380 Hb_002783_100 Hb_002783_100 Hb_001975_110--Hb_002783_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0210671 0.149397 0.298148 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.107934

CAGE analysis