Hb_011628_020

Information

Type -
Description -
Location Contig11628: 25159-27144
Sequence    

Annotation

kegg
ID rcu:RCOM_0788280
description hypothetical protein
nr
ID XP_002531117.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SYP8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0788280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05011: 26745-27152
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011628_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_033834_050 0.1867205673 - - conserved hypothetical protein [Ricinus communis]
3 Hb_042871_010 0.1968181444 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
4 Hb_000943_060 0.2027313675 - - PREDICTED: uncharacterized protein LOC105635589 [Jatropha curcas]
5 Hb_091889_010 0.2145060912 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
6 Hb_002784_100 0.2173805833 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
7 Hb_003891_080 0.2260449122 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
8 Hb_005321_010 0.2337745304 - - PREDICTED: uncharacterized protein LOC105644542 [Jatropha curcas]
9 Hb_000656_410 0.2355738943 - - hypothetical protein POPTR_0003s06410g [Populus trichocarpa]
10 Hb_000622_080 0.2536771447 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
11 Hb_000572_040 0.2548865482 - - hypothetical protein POPTR_0006s14815g [Populus trichocarpa]
12 Hb_003891_090 0.2585807461 - - -
13 Hb_000062_300 0.2609021906 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
14 Hb_002217_460 0.2662373628 - - PREDICTED: transcription factor bHLH147-like [Jatropha curcas]
15 Hb_026687_010 0.2730041292 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Eucalyptus grandis]
16 Hb_001214_080 0.276404073 - - PREDICTED: transcription factor HBP-1b(c38)-like [Jatropha curcas]
17 Hb_011609_110 0.2774190031 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
18 Hb_028271_020 0.280925603 - - acyl-CoA oxidase, putative [Ricinus communis]
19 Hb_003732_040 0.2816751541 - - putative esterase family protein [Populus trichocarpa]
20 Hb_006277_070 0.2823806889 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011628_020 Hb_011628_020 Hb_033834_050 Hb_033834_050 Hb_011628_020--Hb_033834_050 Hb_042871_010 Hb_042871_010 Hb_011628_020--Hb_042871_010 Hb_000943_060 Hb_000943_060 Hb_011628_020--Hb_000943_060 Hb_091889_010 Hb_091889_010 Hb_011628_020--Hb_091889_010 Hb_002784_100 Hb_002784_100 Hb_011628_020--Hb_002784_100 Hb_003891_080 Hb_003891_080 Hb_011628_020--Hb_003891_080 Hb_033834_050--Hb_002784_100 Hb_011609_110 Hb_011609_110 Hb_033834_050--Hb_011609_110 Hb_033834_050--Hb_042871_010 Hb_028271_020 Hb_028271_020 Hb_033834_050--Hb_028271_020 Hb_001449_100 Hb_001449_100 Hb_033834_050--Hb_001449_100 Hb_000062_300 Hb_000062_300 Hb_033834_050--Hb_000062_300 Hb_000656_410 Hb_000656_410 Hb_042871_010--Hb_000656_410 Hb_042871_010--Hb_011609_110 Hb_042871_010--Hb_000062_300 Hb_000239_110 Hb_000239_110 Hb_042871_010--Hb_000239_110 Hb_014497_080 Hb_014497_080 Hb_042871_010--Hb_014497_080 Hb_000943_060--Hb_091889_010 Hb_010506_010 Hb_010506_010 Hb_000943_060--Hb_010506_010 Hb_001477_150 Hb_001477_150 Hb_000943_060--Hb_001477_150 Hb_026687_010 Hb_026687_010 Hb_000943_060--Hb_026687_010 Hb_002217_460 Hb_002217_460 Hb_000943_060--Hb_002217_460 Hb_091889_010--Hb_010506_010 Hb_000120_150 Hb_000120_150 Hb_091889_010--Hb_000120_150 Hb_001164_030 Hb_001164_030 Hb_091889_010--Hb_001164_030 Hb_091889_010--Hb_002217_460 Hb_002784_100--Hb_028271_020 Hb_002784_100--Hb_001449_100 Hb_002784_100--Hb_000656_410 Hb_002784_100--Hb_011609_110 Hb_002784_100--Hb_042871_010 Hb_003891_080--Hb_000062_300 Hb_003891_080--Hb_000656_410 Hb_003891_080--Hb_033834_050 Hb_003777_360 Hb_003777_360 Hb_003891_080--Hb_003777_360 Hb_000130_230 Hb_000130_230 Hb_003891_080--Hb_000130_230 Hb_003891_080--Hb_042871_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0693597 10.3443 0.49719 4.36255 0.0433456 0.304801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43062 56.6736 5.89189 2.39854 2.29572

CAGE analysis