Hb_011628_030

Information

Type -
Description -
Location Contig11628: 27898-28536
Sequence    

Annotation

kegg
ID rcu:RCOM_0788110
description hypothetical protein
nr
ID XP_002531110.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P93823
description RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1
trembl
ID B9SYP1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0788110 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl66-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05011: 26745-27152
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011628_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_047163_010 0.0438575124 - - PREDICTED: periaxin-like [Populus euphratica]
3 Hb_059162_010 0.0646647964 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_125876_010 0.0667203576 - - unnamed protein product [Vitis vinifera]
5 Hb_004931_060 0.0710424699 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
6 Hb_005550_070 0.0715259366 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
7 Hb_002743_030 0.0770556584 transcription factor TF Family: MYB PREDICTED: transcription factor RAX2 [Populus euphratica]
8 Hb_005846_010 0.0787539669 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
9 Hb_005731_080 0.0946481448 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
10 Hb_004109_300 0.0959062845 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
11 Hb_005993_070 0.0977239606 - - lipid binding protein, putative [Ricinus communis]
12 Hb_000101_050 0.100189839 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
13 Hb_006446_060 0.1017451406 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
14 Hb_041769_010 0.106056586 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
15 Hb_002603_020 0.1075604973 - - PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD2-like isoform X1 [Jatropha curcas]
16 Hb_002917_020 0.1077386516 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
17 Hb_156949_010 0.1099047182 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
18 Hb_007735_010 0.1101821649 - - Gibberellin 20 oxidase, putative [Ricinus communis]
19 Hb_183700_010 0.1158415852 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_003074_070 0.1178370911 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_011628_030 Hb_011628_030 Hb_047163_010 Hb_047163_010 Hb_011628_030--Hb_047163_010 Hb_059162_010 Hb_059162_010 Hb_011628_030--Hb_059162_010 Hb_125876_010 Hb_125876_010 Hb_011628_030--Hb_125876_010 Hb_004931_060 Hb_004931_060 Hb_011628_030--Hb_004931_060 Hb_005550_070 Hb_005550_070 Hb_011628_030--Hb_005550_070 Hb_002743_030 Hb_002743_030 Hb_011628_030--Hb_002743_030 Hb_047163_010--Hb_059162_010 Hb_047163_010--Hb_125876_010 Hb_047163_010--Hb_002743_030 Hb_004109_300 Hb_004109_300 Hb_047163_010--Hb_004109_300 Hb_047163_010--Hb_004931_060 Hb_041769_010 Hb_041769_010 Hb_059162_010--Hb_041769_010 Hb_004185_040 Hb_004185_040 Hb_059162_010--Hb_004185_040 Hb_059162_010--Hb_002743_030 Hb_004195_040 Hb_004195_040 Hb_059162_010--Hb_004195_040 Hb_005846_010 Hb_005846_010 Hb_125876_010--Hb_005846_010 Hb_125876_010--Hb_002743_030 Hb_156949_010 Hb_156949_010 Hb_125876_010--Hb_156949_010 Hb_002603_020 Hb_002603_020 Hb_125876_010--Hb_002603_020 Hb_125876_010--Hb_004109_300 Hb_186298_010 Hb_186298_010 Hb_004931_060--Hb_186298_010 Hb_002917_020 Hb_002917_020 Hb_004931_060--Hb_002917_020 Hb_004931_060--Hb_005550_070 Hb_004931_060--Hb_059162_010 Hb_005550_070--Hb_005846_010 Hb_005550_070--Hb_125876_010 Hb_005550_070--Hb_047163_010 Hb_005550_070--Hb_004109_300 Hb_005550_070--Hb_156949_010 Hb_003074_070 Hb_003074_070 Hb_002743_030--Hb_003074_070 Hb_002743_030--Hb_002603_020 Hb_005731_080 Hb_005731_080 Hb_002743_030--Hb_005731_080 Hb_002743_030--Hb_004109_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.52663 0.152753 0.161574 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.32323 0

CAGE analysis