Hb_011628_040

Information

Type -
Description -
Location Contig11628: 30413-31779
Sequence    

Annotation

kegg
ID cic:CICLE_v10032980mg
description hypothetical protein
nr
ID XP_006436065.1
description hypothetical protein CICLE_v10032980mg [Citrus clementina]
swissprot
ID O22644
description 60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1
trembl
ID A0A067FK20
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031766mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l23a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05012: 30482-32727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011628_040 0.0 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
2 Hb_003203_040 0.0591889032 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
3 Hb_005511_160 0.067653452 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
4 Hb_003893_050 0.0724608541 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
5 Hb_001505_020 0.0752561651 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
6 Hb_001214_160 0.0784880136 - - 60S ribosomal protein L27B [Hevea brasiliensis]
7 Hb_005063_050 0.0834194635 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
8 Hb_005731_170 0.0836139373 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
9 Hb_003226_210 0.0842663365 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
10 Hb_002864_050 0.0863005847 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
11 Hb_001141_030 0.0866005123 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
12 Hb_001998_050 0.0869286025 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
13 Hb_002830_020 0.0876664003 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_003077_040 0.089250705 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
15 Hb_000029_200 0.0903837942 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
16 Hb_001085_120 0.0904634279 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
17 Hb_011311_010 0.0915460847 - - 60S ribosomal protein L27C [Hevea brasiliensis]
18 Hb_012368_020 0.0915985518 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
19 Hb_000526_040 0.0917071772 - - 60S ribosomal protein L6, putative [Ricinus communis]
20 Hb_000975_320 0.0917162409 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011628_040 Hb_011628_040 Hb_003203_040 Hb_003203_040 Hb_011628_040--Hb_003203_040 Hb_005511_160 Hb_005511_160 Hb_011628_040--Hb_005511_160 Hb_003893_050 Hb_003893_050 Hb_011628_040--Hb_003893_050 Hb_001505_020 Hb_001505_020 Hb_011628_040--Hb_001505_020 Hb_001214_160 Hb_001214_160 Hb_011628_040--Hb_001214_160 Hb_005063_050 Hb_005063_050 Hb_011628_040--Hb_005063_050 Hb_001141_030 Hb_001141_030 Hb_003203_040--Hb_001141_030 Hb_003203_040--Hb_003893_050 Hb_010672_070 Hb_010672_070 Hb_003203_040--Hb_010672_070 Hb_003203_040--Hb_005511_160 Hb_003203_040--Hb_005063_050 Hb_002259_070 Hb_002259_070 Hb_005511_160--Hb_002259_070 Hb_001979_040 Hb_001979_040 Hb_005511_160--Hb_001979_040 Hb_003656_070 Hb_003656_070 Hb_005511_160--Hb_003656_070 Hb_007416_030 Hb_007416_030 Hb_005511_160--Hb_007416_030 Hb_003893_050--Hb_005063_050 Hb_000283_110 Hb_000283_110 Hb_003893_050--Hb_000283_110 Hb_002431_050 Hb_002431_050 Hb_003893_050--Hb_002431_050 Hb_010672_060 Hb_010672_060 Hb_003893_050--Hb_010672_060 Hb_000029_200 Hb_000029_200 Hb_003893_050--Hb_000029_200 Hb_006816_530 Hb_006816_530 Hb_001505_020--Hb_006816_530 Hb_002713_070 Hb_002713_070 Hb_001505_020--Hb_002713_070 Hb_000136_170 Hb_000136_170 Hb_001505_020--Hb_000136_170 Hb_001433_050 Hb_001433_050 Hb_001505_020--Hb_001433_050 Hb_000227_230 Hb_000227_230 Hb_001505_020--Hb_000227_230 Hb_001814_050 Hb_001814_050 Hb_001505_020--Hb_001814_050 Hb_003226_210 Hb_003226_210 Hb_001214_160--Hb_003226_210 Hb_001214_160--Hb_006816_530 Hb_000363_480 Hb_000363_480 Hb_001214_160--Hb_000363_480 Hb_000102_020 Hb_000102_020 Hb_001214_160--Hb_000102_020 Hb_004125_110 Hb_004125_110 Hb_001214_160--Hb_004125_110 Hb_008921_020 Hb_008921_020 Hb_005063_050--Hb_008921_020 Hb_005063_050--Hb_010672_060 Hb_000699_160 Hb_000699_160 Hb_005063_050--Hb_000699_160 Hb_000265_050 Hb_000265_050 Hb_005063_050--Hb_000265_050 Hb_143496_010 Hb_143496_010 Hb_005063_050--Hb_143496_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
175.058 99.0159 211.625 192.338 223.882 339.825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
447.568 908.513 450.314 173.38 94.1866

CAGE analysis