Hb_011628_060

Information

Type -
Description -
Location Contig11628: 37987-42544
Sequence    

Annotation

kegg
ID rcu:RCOM_0787890
description Adenosine 3'-phospho 5'-phosphosulfate transporter, putative
nr
ID XP_002531108.1
description Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]
swissprot
ID Q6NMB6
description UDP-galactose/UDP-glucose transporter 5B OS=Arabidopsis thaliana GN=At5g59740 PE=2 SV=1
trembl
ID B9SYN9
description Adenosine 3'-phospho 5'-phosphosulfate transporter, putative OS=Ricinus communis GN=RCOM_0787890 PE=4 SV=1
Gene Ontology
ID GO:0016021
description udp-galactose udp-glucose transporter 5b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05013: 38157-42521 , PASA_asmbl_05014: 42119-42307
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011628_060 0.0 - - Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]
2 Hb_172632_100 0.0682307746 - - PREDICTED: reticulon-like protein B22 [Jatropha curcas]
3 Hb_000783_010 0.07157158 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
4 Hb_003528_030 0.0721680242 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
5 Hb_008616_050 0.0723009524 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
6 Hb_000200_020 0.0724931881 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
7 Hb_004109_340 0.0736043005 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
8 Hb_001366_370 0.0737035822 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
9 Hb_001348_020 0.0751143998 - - PREDICTED: uncharacterized protein LOC105638926 isoform X2 [Jatropha curcas]
10 Hb_000720_040 0.076798711 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
11 Hb_001016_120 0.078672147 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
12 Hb_003994_230 0.0795489253 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
13 Hb_000381_120 0.0801447319 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
14 Hb_007676_080 0.0812615821 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
15 Hb_000392_430 0.081899104 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
16 Hb_001279_150 0.0822000896 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
17 Hb_003750_050 0.0823471634 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
18 Hb_023001_040 0.0832594604 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
19 Hb_000116_270 0.0838685846 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
20 Hb_001318_280 0.0843084196 - - Protein FAM18B, putative [Ricinus communis]

Gene co-expression network

sample Hb_011628_060 Hb_011628_060 Hb_172632_100 Hb_172632_100 Hb_011628_060--Hb_172632_100 Hb_000783_010 Hb_000783_010 Hb_011628_060--Hb_000783_010 Hb_003528_030 Hb_003528_030 Hb_011628_060--Hb_003528_030 Hb_008616_050 Hb_008616_050 Hb_011628_060--Hb_008616_050 Hb_000200_020 Hb_000200_020 Hb_011628_060--Hb_000200_020 Hb_004109_340 Hb_004109_340 Hb_011628_060--Hb_004109_340 Hb_001318_280 Hb_001318_280 Hb_172632_100--Hb_001318_280 Hb_001268_240 Hb_001268_240 Hb_172632_100--Hb_001268_240 Hb_000081_160 Hb_000081_160 Hb_172632_100--Hb_000081_160 Hb_172632_100--Hb_008616_050 Hb_001599_040 Hb_001599_040 Hb_172632_100--Hb_001599_040 Hb_000510_300 Hb_000510_300 Hb_000783_010--Hb_000510_300 Hb_000783_010--Hb_000200_020 Hb_001366_370 Hb_001366_370 Hb_000783_010--Hb_001366_370 Hb_000720_040 Hb_000720_040 Hb_000783_010--Hb_000720_040 Hb_000331_180 Hb_000331_180 Hb_000783_010--Hb_000331_180 Hb_007481_010 Hb_007481_010 Hb_003528_030--Hb_007481_010 Hb_000352_300 Hb_000352_300 Hb_003528_030--Hb_000352_300 Hb_003683_020 Hb_003683_020 Hb_003528_030--Hb_003683_020 Hb_012498_010 Hb_012498_010 Hb_003528_030--Hb_012498_010 Hb_000477_050 Hb_000477_050 Hb_003528_030--Hb_000477_050 Hb_004990_010 Hb_004990_010 Hb_003528_030--Hb_004990_010 Hb_001232_190 Hb_001232_190 Hb_008616_050--Hb_001232_190 Hb_002641_060 Hb_002641_060 Hb_008616_050--Hb_002641_060 Hb_004545_110 Hb_004545_110 Hb_008616_050--Hb_004545_110 Hb_009898_050 Hb_009898_050 Hb_008616_050--Hb_009898_050 Hb_008616_050--Hb_001318_280 Hb_008847_030 Hb_008847_030 Hb_008616_050--Hb_008847_030 Hb_000116_270 Hb_000116_270 Hb_000200_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_000200_020--Hb_000599_250 Hb_000200_020--Hb_001366_370 Hb_001159_130 Hb_001159_130 Hb_000200_020--Hb_001159_130 Hb_001218_030 Hb_001218_030 Hb_000200_020--Hb_001218_030 Hb_002042_150 Hb_002042_150 Hb_004109_340--Hb_002042_150 Hb_000136_260 Hb_000136_260 Hb_004109_340--Hb_000136_260 Hb_023001_040 Hb_023001_040 Hb_004109_340--Hb_023001_040 Hb_161574_020 Hb_161574_020 Hb_004109_340--Hb_161574_020 Hb_001189_070 Hb_001189_070 Hb_004109_340--Hb_001189_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.91899 2.69404 5.36313 7.58249 3.64549 5.79365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.11328 7.18915 4.91578 7.09922 3.87862

CAGE analysis