Hb_011633_040

Information

Type -
Description -
Location Contig11633: 29913-37407
Sequence    

Annotation

kegg
ID rcu:RCOM_0907020
description S-locus-specific glycoprotein S6 precursor, putative (EC:2.7.10.2)
nr
ID XP_012091451.1
description PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
swissprot
ID O81905
description Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1
trembl
ID A0A067JAQ7
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_21323 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like serine threonine-protein kinase sd1-8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011633_040 0.0 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
2 Hb_002539_010 0.1077670592 - - hypothetical protein JCGZ_15711 [Jatropha curcas]
3 Hb_029921_030 0.1293532098 - - conserved hypothetical protein [Ricinus communis]
4 Hb_027380_190 0.157672866 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
5 Hb_152868_030 0.159890709 - - abhydrolase domain containing, putative [Ricinus communis]
6 Hb_012545_090 0.170757166 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
7 Hb_001140_360 0.1707857363 - - -
8 Hb_012760_040 0.1710786868 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
9 Hb_006916_110 0.1813417081 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
10 Hb_002539_020 0.1815527549 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
11 Hb_000853_060 0.1828552362 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
12 Hb_000139_140 0.1837181634 - - Acyl-CoA synthetase [Ricinus communis]
13 Hb_000337_010 0.1844770384 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
14 Hb_008226_070 0.1849808335 - - PREDICTED: expansin-A8 [Jatropha curcas]
15 Hb_002170_020 0.1850550883 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]
16 Hb_001390_030 0.1851501903 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
17 Hb_007423_020 0.1853137649 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
18 Hb_003972_060 0.1864546725 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
19 Hb_002471_260 0.1874246996 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
20 Hb_000421_270 0.1880049918 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]

Gene co-expression network

sample Hb_011633_040 Hb_011633_040 Hb_002539_010 Hb_002539_010 Hb_011633_040--Hb_002539_010 Hb_029921_030 Hb_029921_030 Hb_011633_040--Hb_029921_030 Hb_027380_190 Hb_027380_190 Hb_011633_040--Hb_027380_190 Hb_152868_030 Hb_152868_030 Hb_011633_040--Hb_152868_030 Hb_012545_090 Hb_012545_090 Hb_011633_040--Hb_012545_090 Hb_001140_360 Hb_001140_360 Hb_011633_040--Hb_001140_360 Hb_002539_020 Hb_002539_020 Hb_002539_010--Hb_002539_020 Hb_000337_010 Hb_000337_010 Hb_002539_010--Hb_000337_010 Hb_000625_030 Hb_000625_030 Hb_002539_010--Hb_000625_030 Hb_001500_070 Hb_001500_070 Hb_002539_010--Hb_001500_070 Hb_008226_070 Hb_008226_070 Hb_002539_010--Hb_008226_070 Hb_002471_260 Hb_002471_260 Hb_029921_030--Hb_002471_260 Hb_003972_060 Hb_003972_060 Hb_029921_030--Hb_003972_060 Hb_001776_190 Hb_001776_190 Hb_029921_030--Hb_001776_190 Hb_000421_270 Hb_000421_270 Hb_029921_030--Hb_000421_270 Hb_006538_190 Hb_006538_190 Hb_029921_030--Hb_006538_190 Hb_027380_190--Hb_152868_030 Hb_000172_280 Hb_000172_280 Hb_027380_190--Hb_000172_280 Hb_001817_100 Hb_001817_100 Hb_027380_190--Hb_001817_100 Hb_000465_150 Hb_000465_150 Hb_027380_190--Hb_000465_150 Hb_000907_150 Hb_000907_150 Hb_027380_190--Hb_000907_150 Hb_007590_090 Hb_007590_090 Hb_027380_190--Hb_007590_090 Hb_005015_110 Hb_005015_110 Hb_152868_030--Hb_005015_110 Hb_002170_020 Hb_002170_020 Hb_152868_030--Hb_002170_020 Hb_003025_030 Hb_003025_030 Hb_152868_030--Hb_003025_030 Hb_152868_030--Hb_000465_150 Hb_000227_040 Hb_000227_040 Hb_012545_090--Hb_000227_040 Hb_012545_090--Hb_008226_070 Hb_012760_040 Hb_012760_040 Hb_012545_090--Hb_012760_040 Hb_004129_050 Hb_004129_050 Hb_012545_090--Hb_004129_050 Hb_000702_060 Hb_000702_060 Hb_012545_090--Hb_000702_060 Hb_009732_020 Hb_009732_020 Hb_012545_090--Hb_009732_020 Hb_001004_140 Hb_001004_140 Hb_001140_360--Hb_001004_140 Hb_000732_190 Hb_000732_190 Hb_001140_360--Hb_000732_190 Hb_000144_120 Hb_000144_120 Hb_001140_360--Hb_000144_120 Hb_001140_360--Hb_012760_040 Hb_082741_010 Hb_082741_010 Hb_001140_360--Hb_082741_010 Hb_008053_060 Hb_008053_060 Hb_001140_360--Hb_008053_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.367122 1.63932 1.87341 2.63629 0.100799 0.428581
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.399087 1.98893 0.824113 6.18614 1.3924

CAGE analysis