Hb_011639_040

Information

Type -
Description -
Location Contig11639: 24272-46590
Sequence    

Annotation

kegg
ID zma:103631258
description oligopeptide transporter 4-like
nr
ID EPS66512.1
description hypothetical protein M569_08265, partial [Genlisea aurea]
swissprot
ID -
description -
trembl
ID S8E2L5
description Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_08265 PE=4 SV=1
Gene Ontology
ID GO:0055085
description oligopeptide transporter 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05067: 24393-24705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011639_040 0.0 - - hypothetical protein M569_08265, partial [Genlisea aurea]
2 Hb_000215_160 0.1896673414 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
3 Hb_002851_080 0.1972870396 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
4 Hb_000406_060 0.2021228081 - - hypothetical protein CICLE_v10000115mg [Citrus clementina]
5 Hb_001006_340 0.2026319532 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
6 Hb_098315_090 0.2071648888 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
7 Hb_183443_010 0.2073039655 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
8 Hb_010021_010 0.2105846104 - - unnamed protein product [Coffea canephora]
9 Hb_127552_040 0.2150045276 - - Uncharacterized protein L484_000643 [Morus notabilis]
10 Hb_000022_170 0.2166532967 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
11 Hb_001431_120 0.2206441203 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
12 Hb_099496_010 0.2210710682 - - PREDICTED: uncharacterized protein LOC105138000 [Populus euphratica]
13 Hb_000816_260 0.2216393629 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
14 Hb_007456_040 0.2217739464 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
15 Hb_003498_130 0.2224147634 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Citrus sinensis]
16 Hb_000809_180 0.2271189556 - - -
17 Hb_000950_060 0.2271753146 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
18 Hb_180450_010 0.2288556567 - - FF domain-containing family protein [Populus trichocarpa]
19 Hb_158092_080 0.2290693182 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
20 Hb_000398_120 0.2298140206 - - PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3-like isoform X4 [Gossypium raimondii]

Gene co-expression network

sample Hb_011639_040 Hb_011639_040 Hb_000215_160 Hb_000215_160 Hb_011639_040--Hb_000215_160 Hb_002851_080 Hb_002851_080 Hb_011639_040--Hb_002851_080 Hb_000406_060 Hb_000406_060 Hb_011639_040--Hb_000406_060 Hb_001006_340 Hb_001006_340 Hb_011639_040--Hb_001006_340 Hb_098315_090 Hb_098315_090 Hb_011639_040--Hb_098315_090 Hb_183443_010 Hb_183443_010 Hb_011639_040--Hb_183443_010 Hb_001098_050 Hb_001098_050 Hb_000215_160--Hb_001098_050 Hb_004724_410 Hb_004724_410 Hb_000215_160--Hb_004724_410 Hb_127552_040 Hb_127552_040 Hb_000215_160--Hb_127552_040 Hb_003292_030 Hb_003292_030 Hb_000215_160--Hb_003292_030 Hb_027792_020 Hb_027792_020 Hb_000215_160--Hb_027792_020 Hb_032876_030 Hb_032876_030 Hb_000215_160--Hb_032876_030 Hb_002851_080--Hb_001006_340 Hb_008114_050 Hb_008114_050 Hb_002851_080--Hb_008114_050 Hb_012146_050 Hb_012146_050 Hb_002851_080--Hb_012146_050 Hb_001431_120 Hb_001431_120 Hb_002851_080--Hb_001431_120 Hb_000256_020 Hb_000256_020 Hb_002851_080--Hb_000256_020 Hb_004411_030 Hb_004411_030 Hb_002851_080--Hb_004411_030 Hb_006829_100 Hb_006829_100 Hb_000406_060--Hb_006829_100 Hb_002374_210 Hb_002374_210 Hb_000406_060--Hb_002374_210 Hb_000406_060--Hb_001006_340 Hb_000106_020 Hb_000106_020 Hb_000406_060--Hb_000106_020 Hb_003913_110 Hb_003913_110 Hb_000406_060--Hb_003913_110 Hb_002005_080 Hb_002005_080 Hb_000406_060--Hb_002005_080 Hb_001006_340--Hb_002005_080 Hb_001006_340--Hb_004411_030 Hb_003060_060 Hb_003060_060 Hb_001006_340--Hb_003060_060 Hb_001006_340--Hb_001431_120 Hb_001754_040 Hb_001754_040 Hb_001006_340--Hb_001754_040 Hb_041327_010 Hb_041327_010 Hb_001006_340--Hb_041327_010 Hb_000823_010 Hb_000823_010 Hb_098315_090--Hb_000823_010 Hb_098315_090--Hb_000106_020 Hb_000122_080 Hb_000122_080 Hb_098315_090--Hb_000122_080 Hb_002025_270 Hb_002025_270 Hb_098315_090--Hb_002025_270 Hb_004657_030 Hb_004657_030 Hb_098315_090--Hb_004657_030 Hb_000455_130 Hb_000455_130 Hb_098315_090--Hb_000455_130 Hb_089206_010 Hb_089206_010 Hb_183443_010--Hb_089206_010 Hb_146339_010 Hb_146339_010 Hb_183443_010--Hb_146339_010 Hb_063943_010 Hb_063943_010 Hb_183443_010--Hb_063943_010 Hb_000566_030 Hb_000566_030 Hb_183443_010--Hb_000566_030 Hb_000334_180 Hb_000334_180 Hb_183443_010--Hb_000334_180 Hb_174473_010 Hb_174473_010 Hb_183443_010--Hb_174473_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38911 0.499586 0.928008 0.445168 1.62741 1.00237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.147014 0.0771239 0.932517 3.57634 1.69668

CAGE analysis