Hb_011639_060

Information

Type -
Description -
Location Contig11639: 58370-64281
Sequence    

Annotation

kegg
ID rcu:RCOM_0818100
description Oligopeptide transporter, putative
nr
ID XP_002518328.1
description Oligopeptide transporter, putative [Ricinus communis]
swissprot
ID Q9FME8
description Oligopeptide transporter 4 OS=Arabidopsis thaliana GN=OPT4 PE=1 SV=1
trembl
ID B9RX59
description Oligopeptide transporter, putative OS=Ricinus communis GN=RCOM_0818100 PE=4 SV=1
Gene Ontology
ID GO:0055085
description oligopeptide transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011639_060 0.0 - - Oligopeptide transporter, putative [Ricinus communis]
2 Hb_002139_010 0.1719748477 - - -
3 Hb_001369_380 0.2582044762 - - F-box family protein, putative [Theobroma cacao]
4 Hb_000160_030 0.259744755 - - putative S-adenosylmethionine-dependent methyltransferase [Morus notabilis]
5 Hb_095471_010 0.2601181561 - - PREDICTED: putative sodium-coupled neutral amino acid transporter 7 [Jatropha curcas]
6 Hb_000943_030 0.2737002803 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002450_110 0.2745141114 - - PREDICTED: geraniol 8-hydroxylase-like [Beta vulgaris subsp. vulgaris]
8 Hb_000313_320 0.2786350879 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
9 Hb_005723_040 0.2800946632 - - PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Jatropha curcas]
10 Hb_046440_010 0.282420098 - - hypothetical protein JCGZ_06190 [Jatropha curcas]
11 Hb_129067_010 0.2886121278 - - Cytochrome P450 superfamily protein [Theobroma cacao]
12 Hb_001632_010 0.2983162176 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
13 Hb_088542_010 0.2985810864 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
14 Hb_104812_030 0.301876309 - - hypothetical protein POPTR_0178s00210g [Populus trichocarpa]
15 Hb_000392_390 0.3048880182 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
16 Hb_170193_010 0.307440761 - - JHL25H03.10 [Jatropha curcas]
17 Hb_003106_010 0.3099953735 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
18 Hb_000605_010 0.3100164813 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
19 Hb_000101_180 0.3103093891 - - -
20 Hb_022174_010 0.3137193055 - - elicitor-responsive protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_011639_060 Hb_011639_060 Hb_002139_010 Hb_002139_010 Hb_011639_060--Hb_002139_010 Hb_001369_380 Hb_001369_380 Hb_011639_060--Hb_001369_380 Hb_000160_030 Hb_000160_030 Hb_011639_060--Hb_000160_030 Hb_095471_010 Hb_095471_010 Hb_011639_060--Hb_095471_010 Hb_000943_030 Hb_000943_030 Hb_011639_060--Hb_000943_030 Hb_002450_110 Hb_002450_110 Hb_011639_060--Hb_002450_110 Hb_011063_020 Hb_011063_020 Hb_002139_010--Hb_011063_020 Hb_000392_390 Hb_000392_390 Hb_002139_010--Hb_000392_390 Hb_002139_010--Hb_000160_030 Hb_046440_010 Hb_046440_010 Hb_002139_010--Hb_046440_010 Hb_003752_050 Hb_003752_050 Hb_002139_010--Hb_003752_050 Hb_090497_010 Hb_090497_010 Hb_001369_380--Hb_090497_010 Hb_005488_110 Hb_005488_110 Hb_001369_380--Hb_005488_110 Hb_000099_210 Hb_000099_210 Hb_001369_380--Hb_000099_210 Hb_001450_100 Hb_001450_100 Hb_001369_380--Hb_001450_100 Hb_008778_010 Hb_008778_010 Hb_001369_380--Hb_008778_010 Hb_000160_030--Hb_011063_020 Hb_003688_170 Hb_003688_170 Hb_000160_030--Hb_003688_170 Hb_000590_030 Hb_000590_030 Hb_000160_030--Hb_000590_030 Hb_000160_030--Hb_000392_390 Hb_000313_320 Hb_000313_320 Hb_095471_010--Hb_000313_320 Hb_129067_010 Hb_129067_010 Hb_095471_010--Hb_129067_010 Hb_000365_260 Hb_000365_260 Hb_095471_010--Hb_000365_260 Hb_000465_120 Hb_000465_120 Hb_095471_010--Hb_000465_120 Hb_000815_100 Hb_000815_100 Hb_095471_010--Hb_000815_100 Hb_032264_130 Hb_032264_130 Hb_095471_010--Hb_032264_130 Hb_000397_100 Hb_000397_100 Hb_000943_030--Hb_000397_100 Hb_003106_010 Hb_003106_010 Hb_000943_030--Hb_003106_010 Hb_005211_160 Hb_005211_160 Hb_000943_030--Hb_005211_160 Hb_000031_030 Hb_000031_030 Hb_000943_030--Hb_000031_030 Hb_000258_080 Hb_000258_080 Hb_000943_030--Hb_000258_080 Hb_002326_050 Hb_002326_050 Hb_000943_030--Hb_002326_050 Hb_000544_040 Hb_000544_040 Hb_002450_110--Hb_000544_040 Hb_000099_220 Hb_000099_220 Hb_002450_110--Hb_000099_220 Hb_001916_130 Hb_001916_130 Hb_002450_110--Hb_001916_130 Hb_002450_110--Hb_095471_010 Hb_007547_040 Hb_007547_040 Hb_002450_110--Hb_007547_040 Hb_002450_110--Hb_000313_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83989 0.0129984 0.113213 0.990189 1.23442 0.917507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0179016 0.0140865 1.9867 0.23496 0.0898027

CAGE analysis