Hb_011640_020

Information

Type -
Description -
Location Contig11640: 16208-16913
Sequence    

Annotation

kegg
ID mtr:MTR_4g010680
description Transparent testa 12 protein
nr
ID CAN59744.1
description hypothetical protein VITISV_036432 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BUX5
description Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_036432 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011640_020 0.0 - - hypothetical protein VITISV_036432 [Vitis vinifera]
2 Hb_006198_050 0.1439044373 - - protein with unknown function [Ricinus communis]
3 Hb_000457_160 0.1490929729 - - PREDICTED: uncharacterized protein LOC105633076 [Jatropha curcas]
4 Hb_000380_180 0.1492892214 - - kinase, putative [Ricinus communis]
5 Hb_103873_010 0.1567021093 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
6 Hb_000907_100 0.1593842558 transcription factor TF Family: zf-HD hypothetical protein POPTR_0012s03770g, partial [Populus trichocarpa]
7 Hb_006602_010 0.1719972806 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
8 Hb_002739_110 0.1748680805 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
9 Hb_002038_060 0.1822062993 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
10 Hb_040996_010 0.1848046437 - - PREDICTED: LOW QUALITY PROTEIN: helicase SEN1-like [Jatropha curcas]
11 Hb_001396_230 0.1865313726 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
12 Hb_001616_120 0.1878033242 - - -
13 Hb_005779_100 0.1884769021 - - DNAJ [Theobroma cacao]
14 Hb_024973_010 0.1914431872 - - PREDICTED: uncharacterized protein LOC105642097 isoform X2 [Jatropha curcas]
15 Hb_001102_110 0.1919254264 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Jatropha curcas]
16 Hb_003497_030 0.1935547757 - - ADP-ribosylation factor, putative [Ricinus communis]
17 Hb_002687_050 0.1947589898 - - PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]
18 Hb_004884_060 0.1966699014 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
19 Hb_004735_010 0.1975443009 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
20 Hb_002248_050 0.1980888347 - - PREDICTED: uncharacterized protein LOC105635697 [Jatropha curcas]

Gene co-expression network

sample Hb_011640_020 Hb_011640_020 Hb_006198_050 Hb_006198_050 Hb_011640_020--Hb_006198_050 Hb_000457_160 Hb_000457_160 Hb_011640_020--Hb_000457_160 Hb_000380_180 Hb_000380_180 Hb_011640_020--Hb_000380_180 Hb_103873_010 Hb_103873_010 Hb_011640_020--Hb_103873_010 Hb_000907_100 Hb_000907_100 Hb_011640_020--Hb_000907_100 Hb_006602_010 Hb_006602_010 Hb_011640_020--Hb_006602_010 Hb_004735_010 Hb_004735_010 Hb_006198_050--Hb_004735_010 Hb_006198_050--Hb_000457_160 Hb_006198_050--Hb_000907_100 Hb_019613_020 Hb_019613_020 Hb_006198_050--Hb_019613_020 Hb_035524_030 Hb_035524_030 Hb_006198_050--Hb_035524_030 Hb_006198_050--Hb_006602_010 Hb_005656_060 Hb_005656_060 Hb_000457_160--Hb_005656_060 Hb_000208_290 Hb_000208_290 Hb_000457_160--Hb_000208_290 Hb_022288_020 Hb_022288_020 Hb_000457_160--Hb_022288_020 Hb_002027_340 Hb_002027_340 Hb_000457_160--Hb_002027_340 Hb_003497_030 Hb_003497_030 Hb_000380_180--Hb_003497_030 Hb_001767_010 Hb_001767_010 Hb_000380_180--Hb_001767_010 Hb_000427_030 Hb_000427_030 Hb_000380_180--Hb_000427_030 Hb_000260_060 Hb_000260_060 Hb_000380_180--Hb_000260_060 Hb_002739_110 Hb_002739_110 Hb_000380_180--Hb_002739_110 Hb_000249_130 Hb_000249_130 Hb_000380_180--Hb_000249_130 Hb_002038_060 Hb_002038_060 Hb_103873_010--Hb_002038_060 Hb_002248_050 Hb_002248_050 Hb_103873_010--Hb_002248_050 Hb_002301_320 Hb_002301_320 Hb_103873_010--Hb_002301_320 Hb_014067_010 Hb_014067_010 Hb_103873_010--Hb_014067_010 Hb_001999_060 Hb_001999_060 Hb_103873_010--Hb_001999_060 Hb_026048_100 Hb_026048_100 Hb_103873_010--Hb_026048_100 Hb_004884_060 Hb_004884_060 Hb_000907_100--Hb_004884_060 Hb_000155_070 Hb_000155_070 Hb_000907_100--Hb_000155_070 Hb_000571_070 Hb_000571_070 Hb_000907_100--Hb_000571_070 Hb_002301_020 Hb_002301_020 Hb_000907_100--Hb_002301_020 Hb_004126_010 Hb_004126_010 Hb_000907_100--Hb_004126_010 Hb_003906_110 Hb_003906_110 Hb_000907_100--Hb_003906_110 Hb_006602_020 Hb_006602_020 Hb_006602_010--Hb_006602_020 Hb_002154_050 Hb_002154_050 Hb_006602_010--Hb_002154_050 Hb_005779_100 Hb_005779_100 Hb_006602_010--Hb_005779_100 Hb_000700_090 Hb_000700_090 Hb_006602_010--Hb_000700_090 Hb_005539_290 Hb_005539_290 Hb_006602_010--Hb_005539_290 Hb_006602_010--Hb_004735_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.75942 0.132305 0 0.234029 6.2823 16.6571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.20278 2.81829 16.9676 2.03281 0.756483

CAGE analysis