Hb_011644_020

Information

Type -
Description -
Location Contig11644: 15710-24343
Sequence    

Annotation

kegg
ID vvi:100267395
description choline-phosphate cytidylyltransferase 2
nr
ID XP_010648209.1
description PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
swissprot
ID Q9ZV56
description Choline-phosphate cytidylyltransferase 1 OS=Arabidopsis thaliana GN=CCT1 PE=1 SV=1
trembl
ID F6HTN6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0017g01980 PE=4 SV=1
Gene Ontology
ID GO:0003824
description choline-phosphate cytidylyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05095: 13278-24653 , PASA_asmbl_05096: 14650-14901
cDNA
(Sanger)
(ID:Location)		 006_D02.ab1: 13998-24377

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011644_020 0.0 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
2 Hb_079326_010 0.0740528501 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
3 Hb_000684_180 0.0839108883 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
4 Hb_000540_140 0.0857180992 - - zinc binding dehydrogenase, putative [Ricinus communis]
5 Hb_023226_060 0.0858428307 - - unnamed protein product [Vitis vinifera]
6 Hb_001195_030 0.0866389304 - - auxilin, putative [Ricinus communis]
7 Hb_007111_040 0.0872783793 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
8 Hb_000134_360 0.0925971479 - - PREDICTED: protein gar2 [Jatropha curcas]
9 Hb_007441_070 0.0962944267 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]
10 Hb_000631_150 0.0986713582 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
11 Hb_003352_050 0.0995370482 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
12 Hb_007757_100 0.1004780487 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
13 Hb_000176_110 0.1007351585 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
14 Hb_009421_100 0.1015568205 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
15 Hb_011282_030 0.1027371048 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
16 Hb_000940_040 0.1029187907 - - PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER isoform X1 [Jatropha curcas]
17 Hb_003384_030 0.1030715051 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
18 Hb_002025_140 0.1045477059 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
19 Hb_000849_100 0.1048420604 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
20 Hb_025557_020 0.1054502436 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]

Gene co-expression network

sample Hb_011644_020 Hb_011644_020 Hb_079326_010 Hb_079326_010 Hb_011644_020--Hb_079326_010 Hb_000684_180 Hb_000684_180 Hb_011644_020--Hb_000684_180 Hb_000540_140 Hb_000540_140 Hb_011644_020--Hb_000540_140 Hb_023226_060 Hb_023226_060 Hb_011644_020--Hb_023226_060 Hb_001195_030 Hb_001195_030 Hb_011644_020--Hb_001195_030 Hb_007111_040 Hb_007111_040 Hb_011644_020--Hb_007111_040 Hb_004881_050 Hb_004881_050 Hb_079326_010--Hb_004881_050 Hb_000372_040 Hb_000372_040 Hb_079326_010--Hb_000372_040 Hb_002475_050 Hb_002475_050 Hb_079326_010--Hb_002475_050 Hb_005368_010 Hb_005368_010 Hb_079326_010--Hb_005368_010 Hb_000134_360 Hb_000134_360 Hb_079326_010--Hb_000134_360 Hb_000573_040 Hb_000573_040 Hb_000684_180--Hb_000573_040 Hb_000631_150 Hb_000631_150 Hb_000684_180--Hb_000631_150 Hb_003352_050 Hb_003352_050 Hb_000684_180--Hb_003352_050 Hb_000684_180--Hb_000134_360 Hb_000684_180--Hb_001195_030 Hb_000540_140--Hb_001195_030 Hb_000181_310 Hb_000181_310 Hb_000540_140--Hb_000181_310 Hb_025557_020 Hb_025557_020 Hb_000540_140--Hb_025557_020 Hb_007305_010 Hb_007305_010 Hb_000540_140--Hb_007305_010 Hb_003006_060 Hb_003006_060 Hb_000540_140--Hb_003006_060 Hb_000733_060 Hb_000733_060 Hb_023226_060--Hb_000733_060 Hb_000175_490 Hb_000175_490 Hb_023226_060--Hb_000175_490 Hb_005288_160 Hb_005288_160 Hb_023226_060--Hb_005288_160 Hb_000768_030 Hb_000768_030 Hb_023226_060--Hb_000768_030 Hb_022256_040 Hb_022256_040 Hb_023226_060--Hb_022256_040 Hb_003666_050 Hb_003666_050 Hb_001195_030--Hb_003666_050 Hb_174865_050 Hb_174865_050 Hb_001195_030--Hb_174865_050 Hb_001195_030--Hb_025557_020 Hb_019871_020 Hb_019871_020 Hb_007111_040--Hb_019871_020 Hb_000392_280 Hb_000392_280 Hb_007111_040--Hb_000392_280 Hb_000300_540 Hb_000300_540 Hb_007111_040--Hb_000300_540 Hb_006029_010 Hb_006029_010 Hb_007111_040--Hb_006029_010 Hb_007111_040--Hb_000684_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.34 12.3538 13.2377 20.302 119.342 100.569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.1999 25.2139 32.3687 21.4559 13.942

CAGE analysis