Hb_011649_010

Information

Type transcription factor
Description TF Family: Pseudo ARR-B
Location Contig11649: 10190-24090
Sequence    

Annotation

kegg
ID rcu:RCOM_1441020
description sensory transduction histidine kinase, putative
nr
ID XP_002531836.1
description sensory transduction histidine kinase, putative [Ricinus communis]
swissprot
ID A2YQ93
description Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2
trembl
ID B9T0R7
description Sensory transduction histidine kinase, putative OS=Ricinus communis GN=RCOM_1441020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05100: 20394-23212
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011649_010 0.0 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
2 Hb_000118_090 0.0814642719 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
3 Hb_010721_020 0.1039412671 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
4 Hb_000317_180 0.1168495898 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
5 Hb_000193_220 0.1174254672 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
6 Hb_071079_020 0.1193414791 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
7 Hb_000045_050 0.1283158044 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
8 Hb_000029_330 0.1283221197 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
9 Hb_000035_340 0.1295981258 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000089_140 0.1298497521 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
11 Hb_002811_250 0.1337157047 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
12 Hb_007803_040 0.133743802 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
13 Hb_001252_030 0.1368717049 - - Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
14 Hb_005488_190 0.1378310256 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
15 Hb_000679_080 0.1380985318 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
16 Hb_007982_040 0.1382959691 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
17 Hb_003849_050 0.1395624852 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000856_280 0.141257067 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
19 Hb_001377_060 0.1413958013 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]
20 Hb_003602_030 0.1443727254 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]

Gene co-expression network

sample Hb_011649_010 Hb_011649_010 Hb_000118_090 Hb_000118_090 Hb_011649_010--Hb_000118_090 Hb_010721_020 Hb_010721_020 Hb_011649_010--Hb_010721_020 Hb_000317_180 Hb_000317_180 Hb_011649_010--Hb_000317_180 Hb_000193_220 Hb_000193_220 Hb_011649_010--Hb_000193_220 Hb_071079_020 Hb_071079_020 Hb_011649_010--Hb_071079_020 Hb_000045_050 Hb_000045_050 Hb_011649_010--Hb_000045_050 Hb_000118_090--Hb_010721_020 Hb_000118_090--Hb_000193_220 Hb_000118_090--Hb_000045_050 Hb_000118_090--Hb_071079_020 Hb_000544_080 Hb_000544_080 Hb_000118_090--Hb_000544_080 Hb_010721_020--Hb_000193_220 Hb_002811_250 Hb_002811_250 Hb_010721_020--Hb_002811_250 Hb_007982_040 Hb_007982_040 Hb_010721_020--Hb_007982_040 Hb_010721_020--Hb_000045_050 Hb_010721_020--Hb_000317_180 Hb_002477_020 Hb_002477_020 Hb_000317_180--Hb_002477_020 Hb_000089_140 Hb_000089_140 Hb_000317_180--Hb_000089_140 Hb_000029_330 Hb_000029_330 Hb_000317_180--Hb_000029_330 Hb_000803_170 Hb_000803_170 Hb_000317_180--Hb_000803_170 Hb_009296_030 Hb_009296_030 Hb_000317_180--Hb_009296_030 Hb_001266_160 Hb_001266_160 Hb_000317_180--Hb_001266_160 Hb_000193_220--Hb_002811_250 Hb_000193_220--Hb_000803_170 Hb_000193_220--Hb_007982_040 Hb_000966_040 Hb_000966_040 Hb_000193_220--Hb_000966_040 Hb_000108_150 Hb_000108_150 Hb_071079_020--Hb_000108_150 Hb_071079_020--Hb_000045_050 Hb_000099_170 Hb_000099_170 Hb_071079_020--Hb_000099_170 Hb_000061_250 Hb_000061_250 Hb_071079_020--Hb_000061_250 Hb_004242_170 Hb_004242_170 Hb_071079_020--Hb_004242_170 Hb_005181_120 Hb_005181_120 Hb_071079_020--Hb_005181_120 Hb_000045_050--Hb_000061_250 Hb_000045_050--Hb_000108_150 Hb_000045_050--Hb_000544_080 Hb_003948_020 Hb_003948_020 Hb_000045_050--Hb_003948_020 Hb_000045_050--Hb_002811_250 Hb_000045_050--Hb_005181_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.620598 1.16821 6.64923 4.29349 1.11915 0.577385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.171963 0.135307 0.481654 0.457379 14.0652

CAGE analysis