Hb_011649_020

Information

Type -
Description -
Location Contig11649: 28226-28578
Sequence    

Annotation

kegg
ID tcc:TCM_034552
description hypothetical protein
nr
ID XP_009760575.1
description PREDICTED: uncharacterized protein LOC104212904 isoform X1 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A061FDW1
description Uncharacterized protein OS=Theobroma cacao GN=TCM_034552 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011649_020 0.0 - - PREDICTED: uncharacterized protein LOC104212904 isoform X1 [Nicotiana sylvestris]
2 Hb_000483_320 0.2267717638 - - Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]
3 Hb_001221_190 0.2276789437 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
4 Hb_002248_040 0.2569787416 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000690_170 0.2571099732 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000023_270 0.2583851532 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003371_050 0.2671208757 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001221_200 0.2685662265 - - -
9 Hb_000088_140 0.2699404145 - - -
10 Hb_004545_180 0.2778145662 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_010171_010 0.2778273332 - - hypothetical protein VITISV_033646 [Vitis vinifera]
12 Hb_001814_060 0.2793207385 - - PREDICTED: uncharacterized protein LOC105650637 [Jatropha curcas]
13 Hb_022149_020 0.2899961992 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000088_150 0.2918359769 - - hypothetical protein POPTR_0013s11250g [Populus trichocarpa]
15 Hb_002377_010 0.2948189641 transcription factor TF Family: C2C2-CO-like PREDICTED: zinc finger protein CONSTANS-LIKE 2-like [Jatropha curcas]
16 Hb_062226_030 0.2965941211 - - -
17 Hb_001899_030 0.3046486033 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
18 Hb_001711_080 0.3054895519 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Phoenix dactylifera]
19 Hb_001474_060 0.30762063 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
20 Hb_006693_040 0.3100782196 - - PREDICTED: homeotic protein female sterile-like [Jatropha curcas]

Gene co-expression network

sample Hb_011649_020 Hb_011649_020 Hb_000483_320 Hb_000483_320 Hb_011649_020--Hb_000483_320 Hb_001221_190 Hb_001221_190 Hb_011649_020--Hb_001221_190 Hb_002248_040 Hb_002248_040 Hb_011649_020--Hb_002248_040 Hb_000690_170 Hb_000690_170 Hb_011649_020--Hb_000690_170 Hb_000023_270 Hb_000023_270 Hb_011649_020--Hb_000023_270 Hb_003371_050 Hb_003371_050 Hb_011649_020--Hb_003371_050 Hb_002377_010 Hb_002377_010 Hb_000483_320--Hb_002377_010 Hb_000343_080 Hb_000343_080 Hb_000483_320--Hb_000343_080 Hb_188063_040 Hb_188063_040 Hb_000483_320--Hb_188063_040 Hb_095744_010 Hb_095744_010 Hb_000483_320--Hb_095744_010 Hb_001863_470 Hb_001863_470 Hb_000483_320--Hb_001863_470 Hb_001545_010 Hb_001545_010 Hb_000483_320--Hb_001545_010 Hb_009838_020 Hb_009838_020 Hb_001221_190--Hb_009838_020 Hb_004899_340 Hb_004899_340 Hb_001221_190--Hb_004899_340 Hb_001711_080 Hb_001711_080 Hb_001221_190--Hb_001711_080 Hb_004545_180 Hb_004545_180 Hb_001221_190--Hb_004545_180 Hb_001221_200 Hb_001221_200 Hb_001221_190--Hb_001221_200 Hb_001221_190--Hb_000023_270 Hb_007595_060 Hb_007595_060 Hb_002248_040--Hb_007595_060 Hb_126395_010 Hb_126395_010 Hb_002248_040--Hb_126395_010 Hb_000457_190 Hb_000457_190 Hb_002248_040--Hb_000457_190 Hb_115031_030 Hb_115031_030 Hb_002248_040--Hb_115031_030 Hb_000331_050 Hb_000331_050 Hb_002248_040--Hb_000331_050 Hb_000061_290 Hb_000061_290 Hb_000690_170--Hb_000061_290 Hb_000088_140 Hb_000088_140 Hb_000690_170--Hb_000088_140 Hb_012633_060 Hb_012633_060 Hb_000690_170--Hb_012633_060 Hb_008226_010 Hb_008226_010 Hb_000690_170--Hb_008226_010 Hb_001276_050 Hb_001276_050 Hb_000690_170--Hb_001276_050 Hb_001832_170 Hb_001832_170 Hb_000690_170--Hb_001832_170 Hb_022149_020 Hb_022149_020 Hb_000023_270--Hb_022149_020 Hb_005976_070 Hb_005976_070 Hb_000023_270--Hb_005976_070 Hb_001252_030 Hb_001252_030 Hb_000023_270--Hb_001252_030 Hb_000347_190 Hb_000347_190 Hb_000023_270--Hb_000347_190 Hb_071079_020 Hb_071079_020 Hb_000023_270--Hb_071079_020 Hb_003371_050--Hb_000331_050 Hb_145745_040 Hb_145745_040 Hb_003371_050--Hb_145745_040 Hb_000120_630 Hb_000120_630 Hb_003371_050--Hb_000120_630 Hb_000608_150 Hb_000608_150 Hb_003371_050--Hb_000608_150 Hb_003371_050--Hb_000483_320 Hb_003371_050--Hb_001545_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.518802 1.38426 0.277254 0.871012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.7196

CAGE analysis