Hb_011649_040

Information

Type -
Description -
Location Contig11649: 35349-35615
Sequence    

Annotation

kegg
ID cic:CICLE_v100111082m
description hypothetical protein
nr
ID KDO73055.1
description hypothetical protein CISIN_1g039733mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067G3S2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039733mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator-like prr37

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05102: 35585-35781 , PASA_asmbl_05103: 35889-35988
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011649_040 0.0 - - hypothetical protein CISIN_1g039733mg [Citrus sinensis]
2 Hb_145745_020 0.0641471496 - - Cell wall-associated hydrolase, partial [Medicago truncatula]
3 Hb_000275_100 0.1632999099 - - BnaC09g26910D [Brassica napus]
4 Hb_010171_010 0.1701583472 - - hypothetical protein VITISV_033646 [Vitis vinifera]
5 Hb_141708_010 0.1724802546 - - hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]
6 Hb_000015_220 0.178343368 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
7 Hb_012049_010 0.1811026858 - - hypothetical protein B456_002G055100 [Gossypium raimondii]
8 Hb_115031_010 0.1891522659 - - photosystem II P680 chlorophyll A apoprotein, partial (chloroplast) [Oenothera grandiflora]
9 Hb_000635_130 0.1904762159 - - hypothetical protein JCGZ_17952 [Jatropha curcas]
10 Hb_015234_010 0.1921232624 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
11 Hb_001146_030 0.197049878 - - cytochrome P450, putative [Ricinus communis]
12 Hb_145745_010 0.1974831815 - - BnaUnng00830D [Brassica napus]
13 Hb_001674_050 0.2052116854 - - cytochrome b6 (chloroplast) [Apios americana]
14 Hb_007645_070 0.2092387159 - - photosystem II cytochrome b559 alpha subunit [Cuscuta obtusiflora]
15 Hb_000844_060 0.2102563428 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
16 Hb_000940_120 0.2125970025 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
17 Hb_004197_030 0.2127123671 - - hypothetical protein JCGZ_16263 [Jatropha curcas]
18 Hb_001085_200 0.2131344619 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
19 Hb_002042_220 0.216690002 - - Kinesin heavy chain, putative [Ricinus communis]
20 Hb_002081_140 0.2171559853 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011649_040 Hb_011649_040 Hb_145745_020 Hb_145745_020 Hb_011649_040--Hb_145745_020 Hb_000275_100 Hb_000275_100 Hb_011649_040--Hb_000275_100 Hb_010171_010 Hb_010171_010 Hb_011649_040--Hb_010171_010 Hb_141708_010 Hb_141708_010 Hb_011649_040--Hb_141708_010 Hb_000015_220 Hb_000015_220 Hb_011649_040--Hb_000015_220 Hb_012049_010 Hb_012049_010 Hb_011649_040--Hb_012049_010 Hb_145745_020--Hb_141708_010 Hb_145745_020--Hb_000275_100 Hb_145745_020--Hb_012049_010 Hb_145745_020--Hb_000015_220 Hb_001674_050 Hb_001674_050 Hb_145745_020--Hb_001674_050 Hb_007595_020 Hb_007595_020 Hb_000275_100--Hb_007595_020 Hb_000275_100--Hb_010171_010 Hb_000367_220 Hb_000367_220 Hb_000275_100--Hb_000367_220 Hb_007595_050 Hb_007595_050 Hb_000275_100--Hb_007595_050 Hb_010171_010--Hb_145745_020 Hb_000483_320 Hb_000483_320 Hb_010171_010--Hb_000483_320 Hb_007237_100 Hb_007237_100 Hb_010171_010--Hb_007237_100 Hb_000915_190 Hb_000915_190 Hb_010171_010--Hb_000915_190 Hb_141708_010--Hb_001674_050 Hb_001338_080 Hb_001338_080 Hb_141708_010--Hb_001338_080 Hb_182972_020 Hb_182972_020 Hb_141708_010--Hb_182972_020 Hb_000627_200 Hb_000627_200 Hb_141708_010--Hb_000627_200 Hb_063885_010 Hb_063885_010 Hb_141708_010--Hb_063885_010 Hb_145745_010 Hb_145745_010 Hb_141708_010--Hb_145745_010 Hb_000015_220--Hb_012049_010 Hb_000043_060 Hb_000043_060 Hb_000015_220--Hb_000043_060 Hb_004197_030 Hb_004197_030 Hb_000015_220--Hb_004197_030 Hb_094074_010 Hb_094074_010 Hb_000015_220--Hb_094074_010 Hb_002294_020 Hb_002294_020 Hb_000015_220--Hb_002294_020 Hb_002960_180 Hb_002960_180 Hb_000015_220--Hb_002960_180 Hb_012049_010--Hb_004197_030 Hb_012049_010--Hb_000043_060 Hb_012049_010--Hb_094074_010 Hb_004329_030 Hb_004329_030 Hb_012049_010--Hb_004329_030 Hb_000940_120 Hb_000940_120 Hb_012049_010--Hb_000940_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.90836 6.82296 0 3.85136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.189604 33.6802

CAGE analysis