Hb_011663_020

Information

Type -
Description -
Location Contig11663: 42401-47118
Sequence    

Annotation

kegg
ID tcc:TCM_018243
description DNA/RNA polymerases superfamily protein
nr
ID AAT38724.1
description Putative retrotransposon protein, identical [Solanum demissum]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID Q6L3S2
description Putative retrotransposon protein, identical OS=Solanum demissum GN=SDM1_41t00017 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011663_020 0.0 - - Putative retrotransposon protein, identical [Solanum demissum]
2 Hb_159198_010 0.2471133691 - - hypothetical protein VITISV_033829 [Vitis vinifera]
3 Hb_000840_040 0.2714835202 - - monoxygenase, putative [Ricinus communis]
4 Hb_063405_020 0.2730916145 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
5 Hb_082987_010 0.2761750202 - - hypothetical protein CICLE_v10030423mg [Citrus clementina]
6 Hb_001062_020 0.2768038507 - - PREDICTED: uncharacterized protein LOC103962405 [Pyrus x bretschneideri]
7 Hb_003185_100 0.2847539934 - - hypothetical protein JCGZ_07188 [Jatropha curcas]
8 Hb_000001_130 0.3019607479 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
9 Hb_038044_020 0.3039533702 - - -
10 Hb_000024_010 0.3119964925 - - Uncharacterized protein TCM_044274 [Theobroma cacao]
11 Hb_004020_060 0.3157347547 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_161010_010 0.3182472039 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_012760_110 0.3223562292 - - PREDICTED: methyltransferase-like protein 23 isoform X1 [Jatropha curcas]
14 Hb_000626_040 0.3228571633 - - PREDICTED: TATA-box-binding protein 1-like [Jatropha curcas]
15 Hb_005227_040 0.3272111484 transcription factor TF Family: HB unnamed protein product [Vitis vinifera]
16 Hb_005048_020 0.3274180995 - - Retrotransposon protein, putative [Theobroma cacao]
17 Hb_001616_110 0.3274253861 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
18 Hb_002791_020 0.3282085864 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
19 Hb_080761_010 0.3301541353 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_000649_180 0.3331477159 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_011663_020 Hb_011663_020 Hb_159198_010 Hb_159198_010 Hb_011663_020--Hb_159198_010 Hb_000840_040 Hb_000840_040 Hb_011663_020--Hb_000840_040 Hb_063405_020 Hb_063405_020 Hb_011663_020--Hb_063405_020 Hb_082987_010 Hb_082987_010 Hb_011663_020--Hb_082987_010 Hb_001062_020 Hb_001062_020 Hb_011663_020--Hb_001062_020 Hb_003185_100 Hb_003185_100 Hb_011663_020--Hb_003185_100 Hb_159198_010--Hb_000840_040 Hb_149515_010 Hb_149515_010 Hb_159198_010--Hb_149515_010 Hb_003517_010 Hb_003517_010 Hb_159198_010--Hb_003517_010 Hb_000067_030 Hb_000067_030 Hb_159198_010--Hb_000067_030 Hb_000141_010 Hb_000141_010 Hb_159198_010--Hb_000141_010 Hb_002740_170 Hb_002740_170 Hb_159198_010--Hb_002740_170 Hb_000840_040--Hb_003185_100 Hb_000840_040--Hb_149515_010 Hb_000840_040--Hb_000141_010 Hb_002043_010 Hb_002043_010 Hb_000840_040--Hb_002043_010 Hb_001485_010 Hb_001485_010 Hb_000840_040--Hb_001485_010 Hb_002360_030 Hb_002360_030 Hb_063405_020--Hb_002360_030 Hb_011310_080 Hb_011310_080 Hb_063405_020--Hb_011310_080 Hb_002188_140 Hb_002188_140 Hb_063405_020--Hb_002188_140 Hb_000001_130 Hb_000001_130 Hb_063405_020--Hb_000001_130 Hb_001114_040 Hb_001114_040 Hb_063405_020--Hb_001114_040 Hb_007054_050 Hb_007054_050 Hb_063405_020--Hb_007054_050 Hb_010883_130 Hb_010883_130 Hb_082987_010--Hb_010883_130 Hb_115376_010 Hb_115376_010 Hb_082987_010--Hb_115376_010 Hb_000764_040 Hb_000764_040 Hb_082987_010--Hb_000764_040 Hb_082987_010--Hb_159198_010 Hb_002805_020 Hb_002805_020 Hb_082987_010--Hb_002805_020 Hb_001062_020--Hb_115376_010 Hb_002791_020 Hb_002791_020 Hb_001062_020--Hb_002791_020 Hb_057451_040 Hb_057451_040 Hb_001062_020--Hb_057451_040 Hb_001206_010 Hb_001206_010 Hb_001062_020--Hb_001206_010 Hb_001062_020--Hb_063405_020 Hb_012760_110 Hb_012760_110 Hb_003185_100--Hb_012760_110 Hb_000527_070 Hb_000527_070 Hb_003185_100--Hb_000527_070 Hb_001230_030 Hb_001230_030 Hb_003185_100--Hb_001230_030 Hb_000340_290 Hb_000340_290 Hb_003185_100--Hb_000340_290 Hb_001616_110 Hb_001616_110 Hb_003185_100--Hb_001616_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0204459 0.00358202 0 0 0.0040186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0082086 0.0157723 0.0162536 0.0175991

CAGE analysis