Hb_011671_040

Information

Type -
Description -
Location Contig11671: 28274-36149
Sequence    

Annotation

kegg
ID rcu:RCOM_1500680
description hypothetical protein
nr
ID XP_012087719.1
description PREDICTED: uncharacterized protein LOC105646469 isoform X2 [Jatropha curcas]
swissprot
ID Q8U4K7
description 2-phosphoglycerate kinase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pgk2 PE=3 SV=1
trembl
ID A0A067JXE7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26448 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05126: 28370-35976 , PASA_asmbl_05127: 33186-33658 , PASA_asmbl_05128: 28370-35976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_040 0.0 - - PREDICTED: uncharacterized protein LOC105646469 isoform X2 [Jatropha curcas]
2 Hb_000025_470 0.0685462836 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
3 Hb_008748_040 0.0753772462 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
4 Hb_008120_010 0.0774322159 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
5 Hb_004127_030 0.0814892076 - - putative Rab geranylgeranyl transferase type II beta subunit family protein [Populus trichocarpa]
6 Hb_000270_490 0.0890838257 - - betaine aldehyde dehydrogenase 1 [Jatropha curcas]
7 Hb_003688_130 0.0907343472 - - phosphoserine phosphatase, putative [Ricinus communis]
8 Hb_000260_170 0.0912371952 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
9 Hb_007403_060 0.0950040043 - - PREDICTED: CAAX prenyl protease 2 [Jatropha curcas]
10 Hb_001935_130 0.0971248913 - - PREDICTED: uncharacterized protein LOC105643176 [Jatropha curcas]
11 Hb_000599_300 0.0992257095 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
12 Hb_002053_140 0.099329904 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
13 Hb_054865_120 0.1004126037 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
14 Hb_003376_330 0.100543569 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
15 Hb_000141_080 0.1010401331 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
16 Hb_000170_200 0.1011086589 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
17 Hb_000735_110 0.1014904675 - - fk506-binding protein, putative [Ricinus communis]
18 Hb_001946_010 0.102390204 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
19 Hb_001366_370 0.1029797748 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
20 Hb_002728_070 0.1034897267 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_011671_040 Hb_011671_040 Hb_000025_470 Hb_000025_470 Hb_011671_040--Hb_000025_470 Hb_008748_040 Hb_008748_040 Hb_011671_040--Hb_008748_040 Hb_008120_010 Hb_008120_010 Hb_011671_040--Hb_008120_010 Hb_004127_030 Hb_004127_030 Hb_011671_040--Hb_004127_030 Hb_000270_490 Hb_000270_490 Hb_011671_040--Hb_000270_490 Hb_003688_130 Hb_003688_130 Hb_011671_040--Hb_003688_130 Hb_002728_070 Hb_002728_070 Hb_000025_470--Hb_002728_070 Hb_000025_470--Hb_008748_040 Hb_054865_120 Hb_054865_120 Hb_000025_470--Hb_054865_120 Hb_000058_100 Hb_000058_100 Hb_000025_470--Hb_000058_100 Hb_000025_470--Hb_003688_130 Hb_005357_080 Hb_005357_080 Hb_008748_040--Hb_005357_080 Hb_000212_330 Hb_000212_330 Hb_008748_040--Hb_000212_330 Hb_008748_040--Hb_054865_120 Hb_000054_090 Hb_000054_090 Hb_008748_040--Hb_000054_090 Hb_009049_020 Hb_009049_020 Hb_008120_010--Hb_009049_020 Hb_000107_200 Hb_000107_200 Hb_008120_010--Hb_000107_200 Hb_002828_020 Hb_002828_020 Hb_008120_010--Hb_002828_020 Hb_002445_120 Hb_002445_120 Hb_008120_010--Hb_002445_120 Hb_007403_060 Hb_007403_060 Hb_008120_010--Hb_007403_060 Hb_000862_030 Hb_000862_030 Hb_004127_030--Hb_000862_030 Hb_000159_090 Hb_000159_090 Hb_004127_030--Hb_000159_090 Hb_026198_070 Hb_026198_070 Hb_004127_030--Hb_026198_070 Hb_004127_030--Hb_000270_490 Hb_001366_370 Hb_001366_370 Hb_004127_030--Hb_001366_370 Hb_003376_330 Hb_003376_330 Hb_000270_490--Hb_003376_330 Hb_000120_060 Hb_000120_060 Hb_000270_490--Hb_000120_060 Hb_073973_100 Hb_073973_100 Hb_000270_490--Hb_073973_100 Hb_003693_070 Hb_003693_070 Hb_000270_490--Hb_003693_070 Hb_000270_490--Hb_026198_070 Hb_003688_130--Hb_054865_120 Hb_005288_190 Hb_005288_190 Hb_003688_130--Hb_005288_190 Hb_002495_040 Hb_002495_040 Hb_003688_130--Hb_002495_040 Hb_001579_270 Hb_001579_270 Hb_003688_130--Hb_001579_270 Hb_003688_130--Hb_008748_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.90628 1.92179 5.25823 8.68726 7.04708 8.81817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0545 5.63946 4.29666 5.84794 3.96194

CAGE analysis